Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq67 147 2e-30 seq377 102 6e-17 seq1 102 6e-17 >seq67 Length=308067 Score = 147 bits (162), Expect = 2e-30 Identities = 336/501 (67%), Gaps = 10/501 (2%) Strand=Plus/Minus Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || |||||||| |||||||| || ||||| ||||||||||| | |||||||| |||| | Sbjct 207912 TCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTTG 207853 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG-ACACGC--AACATC 66535 ||||| ||||| || |||||||||||||| | || ||| | || |||||| | ||| Sbjct 207852 CGTTTCCCGCCGCCCTGGTCGACGTAGCG---GGCAGTGTCGGAGAACACGCGAAGCATG 207796 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATA 66595 || |||| ||||| || |||| || || || ||| ||| || || || | Sbjct 207795 GGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACG 207736 Query 66596 TCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACT 66655 | ||| || | | ||||| || ||||||| ||| |||||| || || ||| || Sbjct 207735 TTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGC 207676 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 || | | ||||| || |||||||| ||||| | || ||| |||| || | | Sbjct 207675 GTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATT 207616 Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775 || || ||| ||| |||| ||| | ||| || | |||||||| || | | Sbjct 207615 TGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCG 207556 Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC--ATGAATCCCGAGTG 66833 |||||| |||||||| | |||| | || | | | | || | || || |||| | Sbjct 207555 GACATGAGGTTGTACGTTTGGATGGCCGCCGCGA--TATCCGACTTGTGGATGCCGACGG 207498 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGT 66893 | |||||||| | || || || || ||| | | | | | || | || | || Sbjct 207497 CGACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATCTTGCCGTCGACCTTCAGCAGGT 207438 Query 66894 AGGAGCGTTCCAGGGTCTTGA 66914 | || |||||||||||||||| Sbjct 207437 ACGACCGTTCCAGGGTCTTGA 207417 Score = 143 bits (158), Expect = 2e-29 Identities = 830/1308 (63%), Gaps = 62/1308 (5%) Strand=Plus/Minus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || ||||||||||| ||||||||||| | ||| || |||||||||||||| | | Sbjct 209242 AGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGC 209183 Query 65180 TTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA 65239 || || | || |||| || || | || ||||| || ||| || ||| | Sbjct 209182 TTGCCAAAGTTAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCG 209123 Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTA 65298 || ||||| || ||||||||||| | |||| || | |||||||| ||||||||||| Sbjct 209122 CCGCGATCGGCGGCCATGTCAATCAG-CGACTTCTGCTTGATCTCCCAAACGGTCTTGTA 209064 Query 65299 CAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAAT 65358 |||| | || || || ||||||| |||||| || || |||| || Sbjct 209063 CAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGTTGTGTGCCAT 209004 Query 65359 AATGCGATTACGCA--TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 | | | |||| ||| || ||||| ||| | ||| || | | || | Sbjct 209003 CAGCTGGTGGCGCAAGTCG--TCGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGG 208946 Query 65417 TGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTG 65476 || |||||||| |||||| || | ||| ||||| | | ||||||||| |||| Sbjct 208945 TGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTG 208886 Query 65477 ATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGA 65536 || || ||| | || |||| || || || ||| || || || || ||||| || Sbjct 208885 TACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGC 208826 Query 65537 GCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAG 65596 |||| || ||| || || |||| || | | | || | | || |||||||| Sbjct 208825 GCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCCTTCAGCGCGTCCCAG 208766 Query 65597 TTCCACATCGGTTTATCGTCGACATCC--ACGGGCCACATATCCTGTTGCAGGGTTCC-- 65652 | ||| ||| || |||| | || |||||| || || || | || Sbjct 208765 TCCCA--TCG------CGACGACGGCTTTACATTCCACATGTCGAACTGGAGAATGCCCT 208714 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTA-TCGTACACTCCCTCCTCCTTGGCAAG----T 65707 | || ||||| || ||| ||| | ||||| || |||| ||| || | Sbjct 208713 GGGAC--GCCGGGCTGCC-AGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCCT 208657 Query 65708 TGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCA 65767 || || | | || || ||||| || || |||||||| ||| || || ||| | Sbjct 208656 TGGAGGCAGTGC---AG-GCCGCAAAGTAGATCGTCTCGAAGATGTCGCGGTTCAGTGCG 208601 Query 65768 CGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 || ||||| ||| |||| |||| |||| ||| || | ||| || || || || Sbjct 208600 CGCGCCTCCGGCGAGTCGAACGGG-TACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTG 208542 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 || || || |||| ||| | || |||| || || || | ||| || || |||||||| Sbjct 208541 GACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGATCGGCGCGCTTCGGGCACAGGGTA 208482 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--C 65944 || ||| ||||| | |||| || | || || || ||| |||||| | Sbjct 208481 ATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAG--TGTACGTCACGTCGTAC 208424 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 | | | ||| || || || | || || |||| || ||||||| Sbjct 208423 AGCTTATGGAAGTCGAAC-GT----GGCG-TC---AGTGACG---------AACTTGGAC 208382 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | || || ||||||||||| || ||||||| | | || |||||||| ||| Sbjct 208381 AGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATT 208322 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || |||||||| ||||||| || || |||| |||| || || ||||| ||| Sbjct 208321 TCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTG 208262 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || || ||||||||||||||||| || || || || || || |||| ||| | ||| ||| Sbjct 208261 CAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGCG 208202 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCG---TACG-TACCGCCCTACCTTTGCGTTCGTAATG 66240 ||| || | | ||| | | || |||| | ||| || | || || || | Sbjct 208201 AACCACAGGTCCTGCGCCCTGATCGTCTTACGTTGCCGGCCCTCGTT----CTCATAGCG 208146 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 |||| | || |||| || ||||| || || | ||||| || || || || Sbjct 208145 TTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGACCGGGCGCCTCGTTCGG 208086 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 || | || |||||| | | || | ||||| |||| || ||||| || ||||| Sbjct 208085 GCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGAACAGATCGGGAATCCA 208026 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 ||| |||| || || || || || |||| ||| || ||||||| || Sbjct 208025 AAGGCCGTAAAACAGGTCACGAGCACGTTCCTCTTCCTTGCCGTGGTT 207978 >seq377 Length=2385 Score = 102 bits (112), Expect = 6e-17 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||| || || | ||||| || | || ||||| |||||||| | | || || ||| Sbjct 1178 TGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGGATCGTTCTGCTCGATTTTCTGGC 1237 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 |||| || || || ||||||| ||| || | |||||||||||| | ||||| ||||||| Sbjct 1238 TGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATCTCGCGACG 1297 Query 61616 AGGGCATGCATTGTGATTTTG-CTGTTT 61642 | || ||||||| ||||||| |||||| Sbjct 1298 AAGGGCTGCATTGCGATTTTGCCTGTTT 1325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 61255 TTGGAA--CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCC 61312 |||||| || ||| || || |||||| | | || | ||| || ||||| || |||| Sbjct 883 TTGGAAGTCGGTTCCTGCGTGAAGTGCAATGGCCAGAAGTGCGATGCTTCTATGGATTCC 942 Query 61313 AGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | |||| |||||||| | |||||||||| |||| | | ||||| ||||| |||| Sbjct 943 AACTTGCTATGGAGAACATTCACTCGGAGACGTACTCGTTGTTGATCGACACGTATATCA 1002 Query 61373 GGGAG--CGG-GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGA 61429 | | || | | ||| |||| |||||||| || ||||||||||| ||| || Sbjct 1003 GAAATTCCGAAGAGAAAC---AACGGTTGTTCAACGCGATCGAGACGATTCCGTGTGTCC 1059 Query 61430 AGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 || |||||| | ||||| | || |||||| Sbjct 1060 AGAAGAAAGCAAAATGGGCACTGAACTGGATC 1091 >seq1 Length=1479440 Score = 102 bits (112), Expect = 6e-17 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 |||| || || | ||||| || | || ||||| |||||||| | | || || ||| Sbjct 1040453 TGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGGATCGTTCTGCTCGATTTTCTGGC 1040394 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 |||| || || || ||||||| ||| || | |||||||||||| | ||||| ||||||| Sbjct 1040393 TGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATCTCGCGACG 1040334 Query 61616 AGGGCATGCATTGTGATTTTG-CTGTTT 61642 | || ||||||| ||||||| |||||| Sbjct 1040333 AAGGGCTGCATTGCGATTTTGCCTGTTT 1040306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 61255 TTGGAA--CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCC 61312 |||||| || ||| || || |||||| | | || | ||| || ||||| || |||| Sbjct 1040748 TTGGAAGTCGGTTCCTGCGTGAAGTGCAATGGCCAGAAGTGCGATGCTTCTATGGATTCC 1040689 Query 61313 AGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | |||| |||||||| | |||||||||| |||| | | ||||| ||||| |||| Sbjct 1040688 AACTTGCTATGGAGAACATTCACTCGGAGACGTACTCGTTGTTGATCGACACGTATATCA 1040629 Query 61373 GGGAG--CGG-GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGA 61429 | | || | | ||| |||| |||||||| || ||||||||||| ||| || Sbjct 1040628 GAAATTCCGAAGAGAAAC---AACGGTTGTTCAACGCGATCGAGACGATTCCGTGTGTCC 1040572 Query 61430 AGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 || |||||| | ||||| | || |||||| Sbjct 1040571 AGAAGAAAGCAAAATGGGCACTGAACTGGATC 1040540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564768144880