Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq146 93.3 2e-13 seq112 86.0 3e-11 seq467 84.2 9e-11 seq1 84.2 9e-11 >seq146 Length=385314 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||| | || | || || |||||||||||||| | ||| || || |||||| Sbjct 258828 ATCTCCTTGAGACGCGGGACACCGAGCGTCACGTTCTTGGCGGAGACACCAGCGAAGTGG 258887 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 || || | || |||| |||||| ||| || |||||| |||| |||| ||| || Sbjct 258888 AACGTATTCAGCGTCATCTGCGTCGCGGGTTCACCGATGGACTGCGCCGCCAGGCAACCG 258947 Query 349202 ACCATCTCGCCGGG 349215 ||||||||||| || Sbjct 258948 ACCATCTCGCCCGG 258961 >seq112 Length=1369157 Score = 86.0 bits (94), Expect = 3e-11 Identities = 172/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 222442 TACCTCCACTCG-CGCACCCCGTCCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCT 222500 ||| | ||| || || |||| || ||| | ||| | ||||| ||| || ||||| || Sbjct 149245 TACTTGCACACGTCGAACCCTGTG-ATCCTGCACAGGGACCTGAAGACCGATAACCTCCT 149303 Query 222501 CGTGG---GCGACTCCCTGTCGATGAAGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGA 222557 || | || ||| |||| | ||||| ||||||||||| | ||||| || ||| Sbjct 149304 GGTCGACCGCAACTGG--GTCG-TCAAGGTCGCCGACTTTGGCCTGACGCGGTTCCTGGA 149360 Query 222558 AACCAACGCCACC-ATGACACGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCA 222616 || | || ||||| | | ||| ||||| ||||| | | |||||| || || Sbjct 149361 CGAGAA-GAAACAGATGACGCAGGTCGGGACGCCAATCTGGATGTCGCCCGAGGTCTGCA 149419 Query 222617 CCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGG 222676 || ||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 149420 TGGGCGACAAGTACACGGAGAAGGCCGACGTGTACGCGTTCGGCATCATCATGTGGGAGA 149479 Query 222677 TCATCAC 222683 |||| || Sbjct 149480 TCATGAC 149486 >seq467 Length=2252 Score = 84.2 bits (92), Expect = 9e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 349069 CGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGAC 349128 ||| |||| || ||||||||||| || |||| ||||| || |||||| | | |||||| Sbjct 5 CGTTGCGTTGATAATCTCCTTGATTCGCGGCACACCCAGCGTTACGTTCATCGACGCGAC 64 Query 349129 GCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGT 349164 ||||| |||||||| |||| || |||| |||||| Sbjct 65 ACCGGCGAAGTGGAACGTCTTCAGAGTCATCTGCGT 100 >seq1 Length=1479440 Score = 84.2 bits (92), Expect = 9e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 349069 CGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGAC 349128 ||| |||| || ||||||||||| || |||| ||||| || |||||| | | |||||| Sbjct 1136053 CGTTGCGTTGATAATCTCCTTGATTCGCGGCACACCCAGCGTTACGTTCATCGACGCGAC 1135994 Query 349129 GCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGT 349164 ||||| |||||||| |||| || |||| |||||| Sbjct 1135993 ACCGGCGAAGTGGAACGTCTTCAGAGTCATCTGCGT 1135958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084720949411266