Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2390 392 6e-107 seq1039 73.4 7e-11 >seq2390 Length=1365 Score = 392 bits (434), Expect = 6e-107 Identities = 264/294 (90%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||| | ||||||| ||| | | ||| | ||||||||||||||||||||||||||| Sbjct 957 TACTACGTTGAATTACTGTTGCGACAACGCCCCATCAGTAGGGTAAAACTAACCTGTCTC 898 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 897 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGCG 838 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 778 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 777 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 718 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | | ||| || |||||||||||||||||| |||||| ||||| |||| Sbjct 717 TCAGACTCCGAAGGCATAAAGGATCGATAGGCCATGCTTTCACAGTTTGGATTC 664 >seq1039 Length=14389 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || || |||| ||||| ||||| Sbjct 11705 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACC 11764 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 11765 CTTGGGACGTACTACCGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 11821 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 11822 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 11876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854374248384