Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1039 295 1e-77 >seq1039 Length=14389 Score = 295 bits (326), Expect = 1e-77 Identities = 228/270 (84%), Gaps = 1/270 (0%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TAT 65 ||||||| ||||||||||||||||| |||||| ||||| || ||||| |||||| | | Sbjct 11538 GGGCTTCCCGCTTAGATGCCTTCAGCGGTTATCCTTTCCATACATAGCTACCCAGCGTTT 11597 Query 66 GCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAG 125 | |||||| | ||||||| |||||||||| |||| ||||||||||||||||||||| Sbjct 11598 ACTGTTGGCACAATAACTGGTACACCAGAGGTATGTCTCTCCCGGTCCTCTCGTACTAAG 11657 Query 126 GACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG 185 || | || |||||| || ||||| || |||||| ||||||||||||||| ||||| Sbjct 11658 GAGAAATCTTCTCAATACTCTAACGCCTACACCGGATATGGACCGAACTGTCTCACGACG 11717 Query 186 TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 245 ||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||| Sbjct 11718 TTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACGTACT 11777 Query 246 TCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||||| || |||||||||||| Sbjct 11778 ACCGCCCCAGGATGCGATGAGCCGACATCG 11807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780777202104