Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2760 342 2e-91 >seq2760 Length=1504 Score = 342 bits (378), Expect = 2e-91 Identities = 283/343 (83%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||| |||||| |||||| |||| |||||||||||||||||||| | Sbjct 211 CGCGTCTGATTAGCTTGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCAGTAGTTGGT 270 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 271 CTGAGAGGATGGCCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 330 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| ||| ||||| ||||| Sbjct 331 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGTGTGAGGGATGA 390 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||| |||| ||||| |||| | |||| | |||| | ||||||||| |||||| Sbjct 391 AGGCTCGTGGGTTGTAAACCTCTTTTCTCAGGAAAGAAGTTCTGACGGTACCTGAGGAAT 450 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||||| || || ||||||||||| Sbjct 451 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGCAAGCGTTATCCG 510 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| ||| |||||||||| || |||||| ||| |||||| Sbjct 511 GAATCACT-GGGCGTAAAGCGTCTGTAGGTTGTTCAGTAAGTC 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497554862336