Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1039 230 8e-58 >seq1039 Length=14389 Score = 230 bits (254), Expect = 8e-58 Identities = 398/564 (71%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| || |||||| |||| || | |||||||||| || ||||||| |||| Sbjct 13624 CGAGTCTGATAAGGGCGCTAGTCACTATTTATAGACCCGAACCCGGATGATCTAGTCATG 13565 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||||| | |||||||| |||||||||||||| ||| |||||||||||| Sbjct 13564 GCCAGGATGAAGCTTAGGTAACACTGAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 13505 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||||||||||| ||||||||||| || || | || ||| |||||||||||| Sbjct 13504 AGCGGATGAGCTGTGATTAGGGGTGAAATGCCAATCGAATCCGGAGCTAGCTGGTTCTCC 13445 Query 182 CCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||| || ||| || | || | | | || |||||| ||||||||| || Sbjct 13444 CCGAAATGCGTTGAGGCGCAGCGGTTAAAT-TTAATGTCAGGGGTAAAGCACTGTTTCGG 13386 Query 241 CTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCAT----CAGTT 295 ||| | | ||| ||||||| | ||||||||| |||| | || || || Sbjct 13385 TGCGGGCTGCGAAAGCG--GTACCAAATCGATGCAAACTCTGAATACTGATTGTACA-TT 13329 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | ||| |||||| || | | |||| | | | | ||||| || | || || Sbjct 13328 TAACC-----AGTGAGACAGTGAGGGATAAGCTTCATTGTCAAGAGGGAAACAGCCCAGA 13274 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | | ||||||||||||| |||| ||||||| | | || || || | ||| | | Sbjct 13273 CCACCAGCTAAGGCCCCTAAATAGTTGCTAAGTGATA--AAGGAGGTGGAAATGCATAAA 13216 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| ||| |||| ||||||| || | |||||||||||||||| |||||||| | Sbjct 13215 CAACCAGGAGGTTTGCTTAGAAGCAG-CAACCCTTTAAAGAGTGCGTAATAGCTCACTGG 13157 Query 476 TCGAG-GAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 || || || || ||| || ||| | |||| ||||| | ||||||| |||||| Sbjct 13156 TCTAGTGATTC-TGCGCCGAAAATGAACGGG-GCTAAGTAACTTGCCGAAGCTGTGGGA- 13100 Query 535 CATTTATATGATCGGTAGGGGAGC 558 |||||| |||||||||||||| Sbjct 13099 ---TTATAT-ATCGGTAGGGGAGC 13080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689549075456