Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1039 320 6e-85 >seq1039 Length=14389 Score = 320 bits (354), Expect = 6e-85 Identities = 421/574 (73%), Gaps = 27/574 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 11942 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTATGCCTTTACACTCTACGACTGATTTCC 12001 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| ||||||||||||||| |||||||||||| |||| ||||| | |||||||||| Sbjct 12002 GACCAGCCTGAGGGAACCTTTGCACGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAG 12060 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCC---AAGGTTAGATATC 177 | ||||| |||||||| |||||||| | || ||| | || ||||||||| || Sbjct 12061 TCAAACTGCCCACCAGAAACTGTCCCTTAGCCGGATAACGGCAATATAAGGTTAGAATTC 12120 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCAT 234 | |||||||||||| |||| | | ||||| | |||| || || || Sbjct 12121 TAACTTTTTCAGAGTGGTATCTCAATGATGGCTCCAACATTCCCACAAGAATGTT---AT 12177 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 ||||| ||||||||||| || | || || || ||||| ||||| ||||||| ||| Sbjct 12178 CATAGCCTCCCACCTATTCTGCGCAGAAAAAGC-CCGAAC-CCAATTTCAAGCTACAGTA 12235 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 12236 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 12295 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGA 411 |||| ||| | || | |||||||| | |||||||||| ||||||| ||||||| Sbjct 12296 TTTCGCCGAGTCTCTCTCTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGA 12355 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 12356 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACT 12415 Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCA-CGAGTCCTCTTAACCTT 530 ||||||||| | | || || | || ||| | | | | || |||||||| Sbjct 12416 GGGGCTTCAGTCGCTAGCTTCGCTTAC----------GCTAACCAACTTCT-TTAACCTT 12464 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||| ||||||||||||| || |||| ||| Sbjct 12465 CCAGCACTGGGCAGGCGTCAGCCCCCATACATCG 12498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702348689664