Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1059 264 9e-66 seq963 217 1e-51 >seq1059 Length=17963 Score = 264 bits (292), Expect = 9e-66 Identities = 997/1530 (65%), Gaps = 77/1530 (5%) Strand=Plus/Plus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 |||||||| |||||||| ||||| | ||| | | || ||||| |||||||||||| Sbjct 14912 GTGAACTGAATCGCATTGGCAGCGGGACGGGTGCGCAAGTAATACATACCGGTCTTGAGG 14971 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACA 65203 || ||| | || || ||||| || || | || | || || | |||| | Sbjct 14972 CCCAGTTTCCATCCGTAAAAGTGCATGGAGGACAGCTTGCCTGCGTTGGGGGCAGCCATA 15031 Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGA-CCACGATCTGCAGCCATGT-CAA 65261 |||| |||||| | || || |||||| |||| ||||| || || ||||| | ||| Sbjct 15032 TGCACATTCAAGCTCATGCTTTGGTCGATG-AACGCGCCACGGTCGGCCGCCATCTTCAA 15090 Query 65262 TGATACGACGTCC-CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGA 65320 || | | || ||| || ||||| ||||| ||||| || ||| | |||| ||| Sbjct 15091 CAAT--GTCTTCTGCGAAATTTCCCAAACGGTTTTGTAAAGTTCACGCAGCTCAGCCGGA 15148 Query 65321 ATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCT 65380 |||||| | | || ||||||||| ||| || || || | ||| | Sbjct 15149 ATCTCCGTCAGGCTTTGTACTGAACCATTGTTTGCGATGATCTTGTTCTTCGTCGCATTG 15208 Query 65381 GACCACAAACCCAAATCGATA-AGATGTTGAACCAAGTGACGATTGATGACTTGGAACTC 65439 ||| || |||| | | |||| | ||| || || | || |||||| Sbjct 15209 TTCCA-AAGGCCAAGACTCTGCAGATCACTCAGCAAATGCTTGTTAACAACGGCGAACTC 15267 Query 65440 GCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTT 65499 ||| | || || || || |||||||| |||||| ||||||||| | || |||| Sbjct 15268 GCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGTGTACGGTTCAAAGCACTCGTTGTT 15327 Query 65500 GCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAA 65559 || ||||| || | || || ||||| |||||||| || ||||| | ||||| ||||| Sbjct 15328 ACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGGCGCTACCAAGAGCGAGTTGCGCAA 15387 Query 65560 TCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC--G 65617 |||| | |||| | | | || || | | | ||| |||| ||||| | | Sbjct 15388 GCCGTGC---TCAAGGATTTTTTGC--TTGAGCGCTGC-CCA-ATCG---TATCGCCCGG 15437 Query 65618 ACATC-----CACGGGCCACATATCCTGTTGCAGGGTTCCGATACTG--GCCGGTGAACC 65670 || | |||| ||||| ||| || || | || | ||| || || || || Sbjct 15438 ACGCCGGCGTCACGCCCCACAAATCAAACTGAAGTTTGCC--TTCTGATGCGGGAGAGCC 15495 Query 65671 GAGGAAAC-TATCGTACACTCCCTCCTCCTTGGCAAG-----TTGACAGCTGGTCTCGAG 65724 || ||| | || ||| || | ||| | || || |||| ||| ||| Sbjct 15496 -AGCAAATGTTTCATACGAACCGTGCTCTTGCGCCAGCTCCATTGA-AGC----CTCACA 15549 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784 || ||||| ||||| |||||||| || ||||| || || ||||||| | |||||| Sbjct 15550 CGCAGCAAAGTAAATCGTCTCGAAGATATCACGATTGAGCTCTTGTGCCTCGTGGCTCTC 15609 Query 65785 GTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGG 65844 | | || | | ||| |||| ||| ||||| || || || ||||| |||| || || || Sbjct 15610 GAATGGGAGGCGCATGAGGATAAACGTGTCAGCTAGCCCCTGAACCCCAAGCCCAATCGG 15669 Query 65845 ACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAAT 65904 ||||| |||| || || ||||||| |||||||||||||||| ||| || || Sbjct 15670 GCGATGGCGCATGTTCGAGTTCTTCGCCTCCTCCACAGGGTAGTAATTGACATCAATGAT 15729 Query 65905 GCGATTCAAATTGCGTGTCACCA-CATG--CACGATA-CGT-CGCA--ATTGT--TCGAA 65955 ||| |||| |||||||||||| | || ||| | || ||| || || | ||| Sbjct 15730 GCGGTTCAGGTTGCGTGTCACCTGCTTGGTCACTTTGGCGAGCGCCTCATGGTCGTAGAA 15789 Query 65956 ATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACC------------ACAAACTTGGG 66003 || || | | || ||||||| || |||||| | Sbjct 15790 TGGGGTCTGATTTGTGC---CGCCTGTGCCGGCGTCCGGTTGCTGCTTGACAAACATATT 15846 Query 66004 AAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAAT 66063 || |||| || || | |||||| || || | ||||||||| || || ||||| | || Sbjct 15847 CAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATGAT 15906 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT--ACTCTTGCGA 66121 ||| ||||||| ||| |||| ||| || ||||| | ||||| || || ||| ||| | Sbjct 15907 TTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACT-TTGAGT 15965 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 | || ||||||||||||| ||||||||| ||||||||||||| || || |||| | Sbjct 15966 TGGCG-GCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACC 16024 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241 || ||| || ||| ||| | ||| ||| | |||| | |||||| | Sbjct 16025 GCAAACCACAGTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGTTTTCGTACTTG 16084 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTT-GTGTGG 66300 ||| || |||||| |||||| ||| |||| | || | ||| || || Sbjct 16085 GTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGG-CGCTTCGTTGGG 16143 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 || | || ||| | || |||| || || || ||| || || || || |||| Sbjct 16144 GCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCA 16203 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 || ||||| |||||||| || || ||| ||| || ||||||| || ||||||| ||| Sbjct 16204 CAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTC 16263 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 |||||||||||| |||||||| ||||| || || | |||| ||| |||| || | || Sbjct 16264 GAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCG 16323 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGG 66537 || || || || || || ||||| || || | |||||| | || |||| ||| || Sbjct 16324 CTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGT---ACACTCGCAGCATTGG 16380 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| | ||||| || |||||| ||||| Sbjct 16381 TACAATGCCGTTTGACGAGCCATTTGTGCC 16410 >seq963 Length=27641 Score = 217 bits (240), Expect = 1e-51 Identities = 569/846 (67%), Gaps = 24/846 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||| || || ||||||||||| | ||||| |||| || | ||| Sbjct 17788 ATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGCCGAGGAAATCGACCTGAGCTCGGAC 17729 Query 61156 ATGAATGACTGG-GAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 || | ||| || || | | | || | ||| || || ||||| || |||||| | || Sbjct 17728 TTGCTGCAGTGGCGATCGCTCAACAAG-GATGAGCAGCACTTCATCAAGCATGTGCTCGC 17670 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| |||||||| ||||| |||||||| | || || ||| || |||| Sbjct 17669 CTTCTTCGCCGCATCGGACGGAATCGTTCTGGAGAATTTGTGCGAGCGCTTCTCGAAGGA 17610 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || | |||| ||||| || || || ||||||||||| || |||||||| |||| Sbjct 17609 CGTCCAGATCCCGGAAGCGCGCTGCTTTTATGGCTTCCAGATCGCGATGGAGAACATCCA 17550 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 |||||| | |||| | ||||| || |||||| | || | | |||| |||| Sbjct 17549 CTCGGAAACGTACTCCTTGCTCATTGACACGTACGTGTCCGACCCAGAGGAA-AAGAACC 17491 Query 61395 AT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 || | ||| | || || || ||| || |||||| || || || ||||| || | Sbjct 17490 ATCTCTTCCACGCTATGGAAGAGATTCCCTGCGTGAAGAAAAAGGCCGAGTGGGCTTTGA 17431 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || || || | |||| || || || | || ||||| | |||| Sbjct 17430 CGTGGATC-TCATCGCA--CGCATCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCG 17374 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | || | |||||| || || || ||||||||||||| | ||||| || || || | Sbjct 17373 AAGGAATTTTTTTCTCCGGCTCTTTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCA 17314 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || || |||||||||||| |||| || || |||||||| |||| || || | Sbjct 17313 TGCCTGGACTCACGTTCAGCAATGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACT 17254 Query 61634 TTGC-TG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| || | ||| | || | | | ||| | ||| || | || || | Sbjct 17253 TTGCGTGCCTCTTG---TACAGCATGTGCCCGCAGAAGCTGCCGAACGA--AACG-GT-G 17201 Query 61691 GTGAGATTGTTCGTGAG-GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | | | || ||| || || | ||| |||||||| | | |||||| || || Sbjct 17200 CTCAACATCATCACGAGCGCTGTTGCGTGCGAGAAGGAATTTATTATTGACGCGCTG-CC 17142 Query 61750 GTCTCAC-TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || | ||||| ||||| | | ||| ||| |||| |||||||| ||||| ||||| Sbjct 17141 GTGCGACTTGATCGGGATGAACAGCGAACTTATGGCGCAATATATTGAGTTTGTCGCCGA 17082 Query 61809 CCGTCTGTT--GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||| ||| | ||| | ||| | ||| | | || | | ||||| ||||| Sbjct 17081 CCGCCTGCTCCAGTC-CCTCGGGCACGAAAAAG-TTTACCACGCCCGCAACCCGTTTGAC 17024 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| |||||||||| || || ||||| || ||||| ||||| ||||| || || Sbjct 17023 TGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTTTTTGAGAAGCGTGTGGGAGAG 16964 Query 61927 TATCAA 61932 || ||| Sbjct 16963 TACCAA 16958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553396084960