Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_029587.1 Length=1932 Score E Sequences producing significant alignments: (Bits) Value seq338 127 2e-26 >seq338 Length=7727 Score = 127 bits (140), Expect = 2e-26 Identities = 202/288 (70%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 548 AGCGACCC--AATATCAAAGTTCAATGGATTTATGGTGAACCAGGAGTCGGTAAATCCAG 605 |||||||| ||| || ||| |||||| || || | || ||||| || || || || Sbjct 601 AGCGACCCGGAATTTCT--GTTGAATGGACCTACGGAGCTCCCGGAGTTGGAAAGTCAAG 658 Query 606 ATTGGCCCACTCAAGTCTTCCAGAAGCCTATGTGAAAGAACCGAGAACCAAGTGGTGGAA 665 | |||| || | | | ||||| || |||||||| || || | | ||| || ||||| Sbjct 659 ACTGGCTCATGAACGAATGCCAGACGCTTATGTGAAGGATCCACGCAACAAATGTTGGAA 718 Query 666 TGGATATATGTGTGaaaaaaaTGTAATAATAGATGATTTCGGTCCTAATGGTATTGATAT 725 ||| || ||| || | | || ||||| || || |||||||| || || |||||||| Sbjct 719 TGGCTACATGCTCGAGACGCAAGTTATAATTGAGGACTTCGGTCCAAAAGGAATTGATAT 778 Query 726 AAACCATCTACTTAGATGGTTTGATAGGTATAAGTGTTTAGTTGAAAACAAAGGAGGAAT 785 ||||| |||| || ||||||||| | || ||||| || || |||| | |||||| Sbjct 779 CAACCACTTACTAAGGTGGTTTGATCGATACAAGTGCAACGTCGAGTACAAGGCAGGAAT 838 Query 786 GATTGCACTGTATGCTGATAATTTTATTATCACAAGCAACTTCCATCC 833 ||| | || || || || | | || | ||||||||||| ||||| Sbjct 839 GATGCCTCTATACGCAGAACAGTGGATCGTGACAAGCAACTTTCATCC 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6073405500552