Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_029591.1 Length=2023 Score E Sequences producing significant alignments: (Bits) Value seq822 82.4 1e-12 seq338 82.4 1e-12 >seq822 Length=421 Score = 82.4 bits (90), Expect = 1e-12 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 642 ACCAAGTGGTGGAACGAATATGCTTTAGAGAAAGACGTCATCATAGATGACTTTGGACCT 701 |||||||||||||||| ||| | |||||||| |||||||| || || | | || Sbjct 10 ACCAAGTGGTGGAACGGATACCGCCTCGAGAAAGAGGTCATCATTGACGATCTCGCGCCA 69 Query 702 GGTGGTATCGATATTAATCACCTCTTGAGGTGGTTTGACCGATACAAATGTTTAGTTGAG 761 ||| || | ||| |||||| | || | ||||| || || || |||||| || || Sbjct 70 AATGGGATTGGTATCAATCACTTACTGCGCTGGTTCGATCGTTATAAATGTAACGTCGAA 129 Query 762 TCAAAAGGTGGAATGATTCCACTTTATGCTGTTAATTTTATTGTAACAAGTAATTTTCAT 821 ||||| | ||| | | ||| |||||| || || || || |||||||||||| | Sbjct 130 GTGAAAGGCAGCATGGTAGCGCTTCATGCTGACAAGTTCATCGTTACAAGTAATTTTAGT 189 Query 822 CCT 824 ||| Sbjct 190 CCT 192 >seq338 Length=7727 Score = 82.4 bits (90), Expect = 1e-12 Identities = 173/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 570 GGAGATCCGGGCGTCGGAAAGTCTCGAAAGGCCCATGAAACGCTCCCGCAAGCGTACGTC 629 |||| ||| || || |||||||| || ||| |||||| | || | || || || Sbjct 633 GGAGCTCCCGGAGTTGGAAAGTCAAGACTGGCTCATGAACGAATGCCAGACGCTTATGTG 692 Query 630 AAAGACCCTCGCACCAAGTGGTGGAACGAATA--TGCTTTAGAGAAAGACGTCATCATAG 687 || || || |||| ||| || ||||| | || |||| |||| | || || || | Sbjct 693 AAGGATCCACGCAACAAATGTTGGAATGGCTACATGCTC--GAGACGCAAGTTATAATTG 750 Query 688 ATGACTTTGGACCTGGTGGTATCGATATTAATCACCTCTTGAGGTGGTTTGACCGATACA 747 | ||||| || || || || ||||| || ||| | | ||||||||||| ||||||| Sbjct 751 AGGACTTCGGTCCAAAAGGAATTGATATCAACCACTTACTAAGGTGGTTTGATCGATACA 810 Query 748 AATGTTTAGTTGAGTCAAAAGGTGGAATGATTCCACTTTATGCTGTTAATTTTATTGTAA 807 | || || |||| || | |||||||| || || || || | | | || || | Sbjct 811 AGTGCAACGTCGAGTACAAGGCAGGAATGATGCCTCTATACGCAGAACAGTGGATCGTGA 870 Query 808 CAAGTAATTTTCATCC 823 |||| || |||||||| Sbjct 871 CAAGCAACTTTCATCC 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6364596175236