Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_030135.1 Length=2002 Score E Sequences producing significant alignments: (Bits) Value seq338 161 1e-36 seq822 107 2e-20 >seq338 Length=7727 Score = 161 bits (178), Expect = 1e-36 Identities = 220/299 (74%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 577 AATTTCAGTCAGATGGATCTGGGGATCTCCCGGAGTGGGCAAGTCTCGAATAGCTCACGA 636 |||||| || ||||| || ||| |||||||||| || ||||| || | ||||| || Sbjct 611 AATTTCTGTTGAATGGACCTACGGAGCTCCCGGAGTTGGAAAGTCAAGACTGGCTCATGA 670 Query 637 GACGT-TGCCTGATGCGTATGTGAAGGATCCAAGAACGAAGTGGTGGAACGGTTACTTGT 695 ||| |||| || || ||||||||||||||| | | || || ||||| || ||| || Sbjct 671 -ACGAATGCCAGACGCTTATGTGAAGGATCCACGCAACAAATGTTGGAATGGCTACATGC 729 Query 696 GTCAAGAAG-ATGTAATAATTGATGATTTCGGTCCTAATGGTATTGATATAAACCATTTA 754 || ||| | | || |||||||| || |||||||| || || |||||||| ||||| ||| Sbjct 730 -TCGAGACGCAAGTTATAATTGAGGACTTCGGTCCAAAAGGAATTGATATCAACCACTTA 788 Query 755 CTAAGATGGTTTGATCGTTATAAATGTTTAGTAGAAAATAAAGGAGGTATGGTTGCCT-T 813 ||||| ||||||||||| || || || || || | || | ||| || | ||||| | Sbjct 789 CTAAGGTGGTTTGATCGATACAAGTGCAACGTCGAGTACAAGGCAGGAAT-GATGCCTCT 847 Query 814 ACATGCAACCAACTTCATTGTAACTAGTAATTTTCATCCGCGTGATATTTTCAAGTTTG 872 | | ||| | | || || || || || ||||||||| | ||||||||||||| || Sbjct 848 ATACGCAGAACAGTGGATCGTGACAAGCAACTTTCATCCGAGGGATATTTTCAAGTATG 906 >seq822 Length=421 Score = 107 bits (118), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 671 ACGAAGTGGTGGAACGGTTACTTGTGTCAAGAA-GATGTAATAATTGATGATTTCGGTCC 729 || |||||||||||||| ||| | || |||| || || || ||||| ||| ||| || Sbjct 10 ACCAAGTGGTGGAACGGATACC-GCCTCGAGAAAGAGGTCATCATTGACGATCTCGCGCC 68 Query 730 TAATGGTATTGATATAAACCATTTACTAAGATGGTTTGATCGTTATAAATGTTTAGTAGA 789 ||||| |||| ||| || || ||||| | ||||| ||||||||||||||| || || Sbjct 69 AAATGGGATTGGTATCAATCACTTACTGCGCTGGTTCGATCGTTATAAATGTAACGTCGA 128 Query 790 AAATAAAGGAGGTATGGTTGCCTTACATGCAACCAACTTCATTGTAACTAGTAATTTT 847 | ||||| | ||||| || | ||||| ||| ||||| || || ||||||||| Sbjct 129 AGTGAAAGGCAGCATGGTAGCGCTTCATGCTGACAAGTTCATCGTTACAAGTAATTTT 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6297398327232