Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq250 675 0.0 seq316 513 2e-140 seq181 104 3e-17 >seq250 Length=47047 Score = 675 bits (748), Expect = 0.0 Identities = 762/1018 (75%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 159794 TGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 159853 |||||| |||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 159854 GGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 159912 || || | ||||| || || | || |||| ||| |||| |||||| | || ||| | Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 159913 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 159972 |||||||| || || || || ||||| ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 159973 CGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTT 160032 |||||||||||| ||||||||||| ||| |||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 160033 CTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCA 160092 ||| || ||||||||||| || || | ||||||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 160093 ACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 160152 || | || || ||||| | | || | | ||| |||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 160153 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 160212 |||||| | ||||||||||| |||||| |||||||| |||||||||||| || || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 160213 TGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCC 160272 ||| ||||||||||| | ||||||| | ||||| || ||||| |||| |||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 160273 TCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCT 160332 | | ||||| |||||||| || |||| ||| ||||||||||||| || || || || || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 160333 TATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGC 160392 ||||| || |||||| | ||||||||||| ||||| ||||||||||| ||| ||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 160393 TATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCA 160452 |||||| || || || || ||||||||| | || | || || || |||| ||| || Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 160453 GAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGG 160512 |||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 160513 CTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTT 160572 ||||| |||||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 160573 CTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCAT 160632 |||| | | | ||||| ||||| || || ||||| || | | ||| || || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 160633 GGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGT 160692 ||| || || | |||||||||||||||||||| || | | |||| |||||| | || Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 160693 TCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGA 160752 | ||||||||||| || | ||||||| ||| | || |||||||| ||||| || Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 160753 GCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCAACTCCTGTTGCA 160810 ||||||||||||||||||||| | ||| | || ||| ||| || ||||||||| Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 >seq316 Length=14323 Score = 513 bits (568), Expect = 2e-140 Identities = 734/1024 (72%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 161509 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGG 161568 || ||||| ||| | | || |||||| | || |||| ||||| ||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 161569 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGCA 161626 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 161627 CGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAA 161686 | ||||| | || |||||||| ||||| | || ||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 161687 ATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTC 161746 | || | ||||| |||||| ||||||||| | |||||| || ||| || || ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 161747 TC-TGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 | ||||| || || |||||||| |||||| || ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGA 161864 | |||| | || | || || ||||| | || || || || || || ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGA 10504 Query 161865 ACTTGCTCGTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 |||| | ||| | ||| | | ||||| || ||||||||||| || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 161925 TGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCC 161984 ||| || || || ||| | || |||||| | || || | ||||| || || || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 161985 ATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTG 162044 ||||| ||||| || || || || || ||| | ||| |||| ||||| || || || Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 162045 GACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTC 162104 |||| | ||||| ||||| ||||||||||| || ||||| | |||||||| || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 162105 TGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATAC 162164 |||||| || |||| ||||||||||| || | | |||||||||| || | || Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 162165 TTTCAAGGCTTTTGACT-CTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACC 162223 || | |||||| ||| | || ||| || || || || || ||||| || || |||| Sbjct 10805 ATTTAGAGCTTTT-ACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 162224 GTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTA 162283 |||| |||||||| || || ||| |||||||| ||| || | ||| | |||||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 162284 TGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTC 162343 || | || || || || | ||| | ||||||||||| || || ||| | ||| | || Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 162344 TTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAAT 162403 | ||| | | ||||| ||||||||||||||||| || | || || ||||||||||||| Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 162404 TTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCAC 162463 ||||||| ||||| || || ||||| || ||||| |||||| ||||||||||| |||| Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 162464 CAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACG 162523 || ||||| || ||||| |||||| ||||||| ||||| |||||||| | || |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 162524 CACT 162527 | || Sbjct 11164 CCCT 11167 >seq181 Length=69431 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 160978 GACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCT 161037 |||||||| || || ||| ||||| || || || || | |||||||| |||||| Sbjct 20317 GACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTATTCTTGCAGAGCTGGTGCGTGCTCT 20376 Query 161038 ACTTGTGCTGGTAAGAT-TGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGA 161096 ||||| |||||||| | | ||| ||||| | ||||||||||| ||||| || | || Sbjct 20377 ACTTGCGCTGGTAAAGTATCAGAA-GGTACGATTGATCAATCTGACCAATCATTTTTAGA 20435 Query 161097 TGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGATGT 161156 ||| |||||| || | |||||||| | || ||||| |||||||| || || ||| Sbjct 20436 TGACGATCAAACTGGTGCTGGATTTGTTTTAACTTGCGTAGCTTATCCTACATCAGATTG 20495 Query 161157 AACTATTCTTGCCGAGCAAGAAGA 161180 || || | || | |||||||| Sbjct 20496 CACAATATTAACCCATCAAGAAGA 20519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551355226909200