Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq250 625 4e-174 seq316 506 3e-138 >seq250 Length=47047 Score = 625 bits (692), Expect = 4e-174 Identities = 731/983 (74%), Gaps = 6/983 (1%) Strand=Plus/Plus Query 188842 TGGGAATCATTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTC 188901 |||||| |||||| ||||| || ||| | |||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 188902 GGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGT 188960 ||||| | ||||| ||||| | | | || || |||| |||||| | || || || Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 188961 CGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTA 189020 ||||| || || || || |||||||| ||||| ||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 189021 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTT 189080 || |||||||| ||||||||||||||| | || || || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 189081 CTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCA 189140 |||||| || |||||||| || || | || |||||| | ||||||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 189141 ACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACT 189200 || | || || ||||| | | || | |||||||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 189201 CTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGC 189260 |||||| | |||||||||||||||||| |||| | |||||| || |||||||| Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 189261 AGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCC 189320 ||| | || || || || |||| || |||||||||| |||||||| | ||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 189321 CTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 189380 || ||||| ||| || ||||||| |||| |||| |||||||| ||||| ||||| || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 189381 GATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGC 189440 |||||||| |||||| | || || || ||||| || ||||| || || ||| || Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 189441 AATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCA 189500 ||||| |||||||| || || ||| | | |||||||| ||||||| || || Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 189501 GAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGG 189560 ||||||||||||||||| || |||||||||||||| || ||||| |||||||| ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 189561 ATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTT 189620 || || |||||| | || ||||||||||| ||||||||||| |||||||||||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 189621 CTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTAC--CGCCCTCGGCGTCAGCACC 189678 |||| | | | |||||||| || ||||| ||||| || | ||| | ||| || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCA--ACT 2067 Query 189679 ATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGT 189738 ||||| || ||| | ||||| ||||||||||| ||||| | |||| | ||||||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 189739 GTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAT 189798 || | ||||| ||||| || | | ||||||||| | ||||||||||| |||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 189799 GAGCGTAACGCTCACAACTTCCC 189821 ||||||||||||||||||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCC 2210 >seq316 Length=14323 Score = 506 bits (560), Expect = 3e-138 Identities = 735/1028 (71%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 189983 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTC 190042 ||||||||| | | ||||||||| | || |||| || ||||| || | |||||||| Sbjct 10151 ATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGGTC 10210 Query 190043 TGGATTACTTCTTTTTCCCACTGCT--TATCTCGCAATTGGTGGCTGGCTTACTGGCACG 190100 ||| ||| | || | || |||| ||||| || | ||||| |||||||| || || Sbjct 10211 TGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACT 10268 Query 190101 ACGTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAAT 190160 || |||| ||| ||||| || || || | |||||| ||| | || ||| ||| Sbjct 10269 ACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAAC 10328 Query 190161 TTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 190220 || | ||||| || || ||||| || ||| || |||||| || ||| || || | ||| Sbjct 10329 TTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTCTT 10387 Query 190221 -TGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGC 190279 ||||| || ||| |||||||||||||| || ||| || | || || || ||| | Sbjct 10388 GTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGAC 10447 Query 190280 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTT-CGTCAGTTTGAAC 190338 |||| | || | || || ||||| | ||||| || || || || ||||||||||| Sbjct 10448 TTTTATAGCTTTACATGGCGCTTTTGGACTAATAGG-TTTTTGTTTACGTCAGTTTGAGA 10506 Query 190339 TGGCACGTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 190398 | ||| | || | ||| | | ||||| || |||||||| || || || ||||| ||| Sbjct 10507 TTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTG 10566 Query 190399 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCAT 190458 | || || || ||| | || || ||| | || ||| | |||||||| || || || Sbjct 10567 TGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCTA 10626 Query 190459 CCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGA 190518 || ||||| || || ||||| | || | | ||||| ||||| || |||||||||| Sbjct 10627 GTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGGA 10686 Query 190519 CGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAG 190578 || | || || ||||| ||||||||||| || ||||| || || || || || | | | Sbjct 10687 CGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGTG 10746 Query 190579 CAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGT 190638 | |||||||||| ||||| || ||||| || | |||||||||||| || |||| | Sbjct 10747 CTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACAT 10806 Query 190639 TTAAAGCATTCGACT-CTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGT 190697 ||| ||| || ||| | || ||| ||||| || ||||| ||||| || || |||||| Sbjct 10807 TTAGAGC-TTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 190698 TTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATG 190757 || ||||| ||||| ||||||||||| || ||| || || ||| | |||||||||||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 190758 CTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTC 190817 | ||||| || |||| ||| ||||||| ||| || || ||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 190818 AACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTC 190877 || | | ||||||||||||||||| || || | ||||| ||||| ||||| || || Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 190878 GAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCT 190937 || || || || || |||||||| || ||||| |||||| ||||| ||||| |||| | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 190938 GTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCT 190997 ||||| || ||||| || ||| |||| ||||| || || ||||| | || ||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 190998 CTGTGATA 191005 || | ||| Sbjct 11166 CTTTAATA 11173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634056111036000