Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq250 675 0.0 seq316 542 3e-149 seq181 107 2e-18 >seq250 Length=47047 Score = 675 bits (748), Expect = 0.0 Identities = 773/1036 (75%), Gaps = 2/1036 (0%) Strand=Plus/Plus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 ||||||| |||||| ||||| || || | || ||| | || |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGT 160681 ||||| | ||||| || || | || |||| || |||| || || | ||| ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 160682 TGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTA 160741 ||||||||| || || || || || |||||||||||||| ||||||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 160742 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 160801 || |||||||| ||||||||||| ||| |||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 160802 CTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCA 160861 |||||| |||||||||||||| ||| | || || ||| | ||||| ||||| |||| Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 160862 ACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACT 160921 || ||||||| ||||| | | || | |||||||||||||| ||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 160922 TTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGC 160981 | |||||| | || ||||| || |||||| ||||||| ||||| || ||||| || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 160982 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCC 161041 ||| | ||| |||||| | |||| || | |||||||| ||||||||||||||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 161042 CCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCT 161101 | ||||| |||||||| |||||||||||| |||| ||||| || || || ||||| || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 161102 GATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGC 161161 |||||||| |||||| || |||||||||||||| || ||||| ||||| ||| || Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 161162 AATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCA 161221 ||||| |||||||| || |||||| | | |||||||| ||||| || || || Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 161222 GAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGG 161281 ||||||||||||||||| |||||||||||||| || || ||||| || ||||| ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 161282 TTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTT 161341 |||||| ||||| | || |||||||| ||| ||||||||||| ||||| | ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 161342 CTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCAT 161401 |||| | | |||||| ||||| ||||| ||||| || | | ||| || || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 161402 GGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGT 161461 ||| || ||| | || || |||||||||||||| || | | || | || || || Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 161462 CCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGA 161521 | ||||| |||||||| | | || ||||||||| | ||||||||||| ||||| || Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 161522 GCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGAGTCCACTCCTGTTGCACT 161581 |||||| |||||||||||||| | || | || ||| ||| || ||||||||| | Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATT 2249 Query 161582 GACCGCACCTACTGTT 161597 || || || ||||| Sbjct 2250 AACAGCTCCAGCTGTT 2265 >seq316 Length=14323 Score = 542 bits (600), Expect = 3e-149 Identities = 743/1029 (72%), Gaps = 12/1029 (1%) Strand=Plus/Plus Query 163881 GGGTGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGG 163940 || ||||| ||| | | || |||||| | || |||| || ||||| || | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 163941 TCTGGATTACTTCTTTTTCCCACTGCT--TATCTTGCAATTGGTGGCTGGCTTACTGGTA 163998 ||||| ||| | || | || |||| |||||||| | ||||| |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 163999 CAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTA 164058 | || ||||| || |||||| || || ||| | || | ||| | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 164059 ATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 164118 | ||| | ||||| || || ||||| || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 164119 TT-TGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGG 164177 || ||||| || || |||| || || |||| || ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 164178 GCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTT-CGGCAGTTTGA 164236 ||||| | || || || || |||| | || || ||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 164237 AATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGC 164296 |||||| | ||||| ||| | | || || || |||||||| || || || || || | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 164297 TGTCTT--TGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCC 164354 ||| || | |||| |||| | ||||| ||| | || ||| |||||||||| ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTT--TAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCT 10622 Query 164355 CCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAAC 164414 || ||||| || || || ||||| ||||| | || ||| | || ||||| |||||| Sbjct 10623 CCTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAAC 10682 Query 164415 TGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTC 164474 ||||| | || || ||||||||||||||||| || || || ||||||||||| | | Sbjct 10683 TGGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTA 10742 Query 164475 TGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAAT 164534 |||||||| ||||||||||| || || ||||| || |||||||||||||| | | Sbjct 10743 TGTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGAC 10802 Query 164535 ACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAAC 164594 || || | || || || |||||| ||||| || || || ||||| || || ||| Sbjct 10803 ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAAC 10862 Query 164595 CGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTT 164654 || || ||||| || ||||||||| ||||||| || || | ||| | || |||||| Sbjct 10863 CGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTT 10922 Query 164655 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 164714 ||| | ||||| || || | || | ||||||||||| ||||| || | || | ||| Sbjct 10923 ATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCA 10982 Query 164715 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAA 164774 | ||| | | |||||||| ||||| |||||||| ||||||| ||||||||||||||| Sbjct 10983 TTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAA 11042 Query 164775 TTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCT 164834 ||||| || |||||||| || || || || | || ||||| | ||||| ||||||||| Sbjct 11043 TTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCT 11102 Query 164835 CCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAAC 164894 || ||| ||||| || ||| ||| |||| |||||||| ||||| || | || ||| Sbjct 11103 GCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 11162 Query 164895 GCACTCTAA 164903 || || ||| Sbjct 11163 GCCCTTTAA 11171 >seq181 Length=69431 Score = 107 bits (118), Expect = 2e-18 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155 ||||| || ||||||||||| ||||| || || | |||||||| | || || || Sbjct 20311 ATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTATTCTTGCAGAGCTGGTGCG 20370 Query 50156 TGTTCCTCTTGTGCTGGTAAA--ATCATTGAGGGTACTGTTGACCAGGAAGATCAATCAT 50213 || || |||| ||||||||| |||| || ||||| |||| || || ||||||| Sbjct 20371 TGCTCTACTTGCGCTGGTAAAGTATCA--GAAGGTACGATTGATCAATCTGACCAATCAT 20428 Query 50214 TTCTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGTCCTACTT 50273 || | ||||| |||||| || ||||| ||||| || || || |||||| |||||| | Sbjct 20429 TTTTAGATGACGATCAAACTGGTGCTGGATTTGTTTTAACTTGCGTAGCTTATCCTACAT 20488 Query 50274 CGGACTGTACTATTGAAACAGGAAAAGAAGAAGAACTGTACTAATTT 50320 | || || || || ||| |||||||| | ||||||||| Sbjct 20489 CAGATTGCACAATATTAACCCATCAAGAAGAAAGCTTATACTAATTT 20535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559306927317600