Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq32048 279 1e-72 seq42172 212 1e-52 seq35950 205 2e-50 seq21152 196 9e-48 seq42319 181 2e-43 seq22555 176 9e-42 seq18145 134 3e-29 seq25966 129 1e-27 >seq32048 Length=424 Score = 279 bits (308), Expect = 1e-72 Identities = 239/289 (83%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 50 CGGTCGGAGCCGAGTGATTCGG-TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 108 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 424 CGGTCGGAGCC------TTCGGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA 371 Query 109 GTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAA 168 || || || ||||||| | | || | | |||||||| ||||||||| || || Sbjct 370 CG-GTTACTGGCAAGGTTAATGTTTGAAGAACAGG-AGCCGAAGCGAAAGCGAGTCTGAA 313 Query 169 CAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTG 228 ||||||| ||| ||||| |||||||||||| ||||||||||||| | ||||||| Sbjct 312 TAGGGCGATTAGTCAGTGGCCGTAGACGCGAAACTTTGTGATCTACCCTTGGTCAGGTTG 253 Query 229 AAGTCGC-GGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATG 287 ||| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 252 AAG-CGCTGGTAACACATCGTGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATG 194 Query 288 ACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 | | |||||||||||||||||||||||||||| |||||||||||||| Sbjct 193 AACTGAGGGTAGGGGTGAAAGGCCAATCAAACTGAGAAATAGCTCGTAC 145 >seq42172 Length=611 Score = 212 bits (234), Expect = 1e-52 Identities = 248/331 (75%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| |||||||| | ||||||||| Sbjct 356 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATGCCTACAAACAGTCGGAGCCC-- 299 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | ||||||||||| ||||||| |||||| | | ||| ||| | | || ||| || Sbjct 298 -GCAAGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTAATT-TAACGAGCAAG 241 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| | || |||||| | |||| Sbjct 240 CTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCCGAATAGGGCGTCAAGTTC 185 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || | ||||| ||||||| |||||||| ||| ||||||| ||||| | |||||| | Sbjct 184 GTTGGATTAGACCCGAAACCGGGTGATCTAGCCATGAGCAGGCTGAAGGCAAGGTAACAC 125 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 || |||||| |||||||| | || |||| ||| || |||||||||| | || ||||||| Sbjct 124 TTGCTGGAGGGCCGAACCGTTGAATGTTGCAAAATTCTCGGATGACTTGTGGCTAGGGGT 65 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| || ||||||| || Sbjct 64 GAAAGGCCAATCAAACTCGGTAATAGCTGGT 34 >seq35950 Length=2181 Score = 205 bits (226), Expect = 2e-50 Identities = 250/337 (74%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||| || |||||| ||| |||||||| | ||||| ||| Sbjct 1926 CCCGACAAGGGGAGTGAAACAGTTCCTGAAACCGGATGCCTACAAACAGTCGGGGCCCAA 1867 Query 61 GAGTGATTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || | ||| ||||||||||| ||||||| |||||| | | ||| ||| || | || | Sbjct 1866 GATTCGTTCTGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTAATC-TGACGA 1808 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 || || ||||| | || || ||| || || ||||||||| || ||||||||| Sbjct 1807 GCAAGCTTAAG-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTT 1753 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 |||| || | ||||| ||||||| |||||||| ||| ||||||| ||||| |||| Sbjct 1752 CAGTTCGTCGGATTAGACCCGAAACCGGGTGATCTAGCCATGAGCAGGCTGAAGGTGCGG 1693 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| || || ||| |||||||| |||||||| ||||||||| | || | Sbjct 1692 TAACACGCACTGAAGGGCCGAACCGACGTCTGTTGAAAAAGACGCGGATGACTTGTGGCT 1633 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||| |||||||||| || Sbjct 1632 AGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 1596 >seq21152 Length=2898 Score = 196 bits (216), Expect = 9e-48 Identities = 247/332 (74%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG-CCGA 62 ||||| ||||| |||||||||||| |||| ||| ||||||||| | ||||||| ||| Sbjct 2557 CCCGACAAGGGGAGTGAAATAGACC-TGAAACCGAACGCCTACAAACAGTCGGAGGCCGC 2499 Query 63 GTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGA 122 | | | ||||||| ||||| | |||||| | | ||| ||| || | |||| | Sbjct 2498 AAG----GCTAACGGCGTACCTTT-GTATAATGGGTCAGCGACTTACTC-TGTGCAGCAA 2445 Query 123 GGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTT 182 | ||||| | ||| ||| || || ||||||||| || || |||||| |||| Sbjct 2444 GCTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGCTTAGTT 2389 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 | | ||||| ||||||| |||||||| || | ||||||||||| |||||||| Sbjct 2388 GCACGGAGTAGACCCGAAACCGGGTGATCTAGTCATGGGCAGGTTGAAGGTGCGGTAACA 2329 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 || ||||||||||||||||| | ||||| |||| | ||||||||| | | |||||| Sbjct 2328 CGCACTGGAGGACCGAACCGGTTACCGTTGCAAAGGTATCGGATGACCTGTGATTAGGGG 2269 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||| |||||| |||||||||| || Sbjct 2268 TGAAAGGCCAACCAAACTCGGAAATAGCTGGT 2237 >seq42319 Length=3671 Score = 181 bits (200), Expect = 2e-43 Identities = 242/332 (73%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| ||||||||||| ||||||| | Sbjct 2565 CCCGACGAGGGGAGTGAAACAGTACCTGAAACCGGACGCCTACAAGCAGTCGGAGGGGCC 2624 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | ||||||||| ||||||| |||||| | | |||| || ||| | | ||| || Sbjct 2625 TTGAGCCCTGACGGCGTACCTTTTGTATAATGGGTCAACGACTTGGTC-TGTCGAGCAAG 2683 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG-ACGAGTT 182 ||||| || ||| ||| || || ||||||||| ||||| |||||| | ||||| Sbjct 2684 CTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTTAAAAGGGCGCATGAGTT 2739 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 | | |||| ||||||| |||||||| ||| | ||||| ||||| |||||| Sbjct 2740 CGACGGATCAGACCCGAAACCAGGTGATCTAGCCATGTGCAGGATGAAGGTTGGGTAACA 2799 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 | |||||| ||||||| | |||||||||| | ||||||| | || |||||| Sbjct 2800 CCAACTGGAGGTCCGAACCAACACCCGTTGAAAAGGGTCTGGATGACGTGTGGCTAGGGG 2859 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| ||| |||||| || Sbjct 2860 TGAAAGGCCAATCAAACCTGGAGATAGCTGGT 2891 >seq22555 Length=2992 Score = 176 bits (194), Expect = 9e-42 Identities = 236/324 (73%), Gaps = 12/324 (4%) Strand=Plus/Minus Query 13 GGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGT 72 ||| |||||||||| |||||| ||| | | ||||||| || |||||| | | ||| Sbjct 2133 GGGAGTGAAATAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCCTCCTTGTGGGGT 2074 Query 73 GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA-GTCGTCACCAGCGAGGTTAAGGG 131 ||| |||| ||||||| |||||| | | ||| ||| || || ||||||||||| | Sbjct 2073 GACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACGTTGT----AGCGAGGTTAACCG 2018 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT-GGCGC 190 | || ||||| || |||| |||| |||||| |||||| ||||| |||| Sbjct 2017 AATAGGGG-----AGCCGTAGGGAAACCGAGTCTTAACTGGGCGAATAGTTGCAAGGCG- 1964 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| | |||||| ||| | ||||||||||| |||||| | ||| Sbjct 1963 TAGACCCGAAACCCGGCGATCTATCCATGTGCAGGTTGAAGGTTGGGTAACACTAACTGG 1904 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| || |||||||| || ||||||| | || |||||||||||||| Sbjct 1903 AGGACCGAACCCACTAATGTTGAAAAATTAGGGGATGACGTGTGGATAGGGGTGAAAGGC 1844 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 |||||| | |||| ||| || || Sbjct 1843 TAATCAAGCCGGGAGATATCTGGT 1820 >seq18145 Length=1127 Score = 134 bits (148), Expect = 3e-29 Identities = 191/266 (72%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| |||| ||||||| |||||| | | ||| ||| ||| |||||||||| Sbjct 6 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCGAGGTTAAC 64 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGC 188 | | || |||||| || |||| |||| | || ||||||| ||| | ||| Sbjct 65 CGAATAGGG-----TAGCCGCAGGGAAACCGAGTCCGAATAGGGCGATTCAGTCGCTGGG 119 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| |||||||| ||| | |||| ||||| | | ||||| ||| | Sbjct 120 TGTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGCACCGTAACAGGTGCT 179 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||| ||| | ||||||| | || |||||||||||| Sbjct 180 GGAGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAG 239 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || || |||||| |||||||||| || Sbjct 240 GCTAAACAAACTTGGAAATAGCTGGT 265 >seq25966 Length=3938 Score = 129 bits (142), Expect = 1e-27 Identities = 226/325 (70%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| || ||||| | || |||||| | | | Sbjct 2797 AGGGGAGTGAAATAGAACCTGAAACCGGATGCATACAAACAGTGGGAGCCTGGAAACG-G 2855 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 2856 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 2914 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCG 189 | | || || || || |||| |||| | || |||||| | ||| | ||| Sbjct 2915 GAATAGGGG-----AGGCGTAGGGAAACCGAGTCCGAATAGGGCGTCTCAGTCGCTGGGT 2969 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | |||| ||||| |||||||| || || Sbjct 2970 GTAGACCCGAAACCGAGTGATCTATCCATGGCCAGGATGAAGGTGCGGTAACACGCACTG 3029 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| ||||||| | |||| ||| | |||||| | || ||||||||||||| Sbjct 3030 GAGGTCCGAACCCACTAGTGTTGCAAAACTAGGGGATGAGCTGTGGATAGGGGTGAAAGG 3089 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | || |||||| ||| |||||| || Sbjct 3090 CTAAACAAACTCGGAGATAGCTGGT 3114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972305730048