Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq13840 192 9e-47 seq46395 165 1e-38 >seq13840 Length=1178 Score = 192 bits (212), Expect = 9e-47 Identities = 187/234 (80%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | ||| |||||| | |||||| ||||||| | Sbjct 22 GTACAAAGGGCAGGGACGTATTCAGCACAGGCT-GATGACCTGTGCTTACAAGGAATT-C 79 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| |||| | | |||||||| |||||||||||| ||||| | | |||||| Sbjct 80 CTCGTTCAAGATCTATAATTGCAAAGATCTATCCCCAGCACGACACGTCCTAACAAGATT 139 Query 120 ACCCG-GACCTGTCGGCCAAGGTGA-TAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| | ||| |||| |||| | || |||| |||| ||||||||||||||||| Sbjct 140 TCCCGTGCCCTTTCGGGACAGGTAAATAAGCTCGCTGAACGTGTCAGTGTAGCGCGCGTG 199 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||| || |||| ||||||||||||||||||||||||| |||||||| || Sbjct 200 CGGCCCAGGACGTCTAGGGGCATCACAGACCTGTTATTGCCTTAAACTTCCATG 253 >seq46395 Length=3700 Score = 165 bits (182), Expect = 1e-38 Identities = 188/249 (76%), Gaps = 20/249 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| | | | |||| |||||||||||||||| | Sbjct 1048 GTACAAAGGGCAGGGACGTAATCAACGCACGTTAG-TGACGTGCGCTTACTAGGAATT-C 991 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 | | || |||| | |||| ||| ||||||||| || |||||| |||| |||||| Sbjct 990 CACCTTCAAGATTCATAATTTCAACGATCTATCCGCAGCACGATACGTATTTATAAGATT 931 Query 120 ACCC-----------GGACC-----TGTCGGCCAAGGTGATAGAC-TCGTTGAATACATC 162 | | ||| | || | |||| ||| || |||||| | ||| Sbjct 930 AAGCTCGTCTATTTCGGAGCAGCATTGATGTACAAGTACATATACCTCGTTGTACGTATC 871 Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 870 AGTGTAGCACGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 811 Query 223 ACTTCCGTG 231 |||||| || Sbjct 810 ACTTCCTTG 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751629856435