Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq46395 118 6e-25 seq13840 109 3e-22 >seq46395 Length=3700 Score = 118 bits (130), Expect = 6e-25 Identities = 98/118 (83%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAA-GACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||| |||||||||||||||||||||||||| || | | || || | | Sbjct 494 GAACCCAAAAGACTTTGATTTCTCGTAAGGTGCCGA---AGGCGGATTGTGCACGCCCTC 438 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || Sbjct 437 CGATCCCTAGTCGGCAACGTTTATGGTTAAGACTAGGACGGTATCTGATCGTCTTTGA 380 >seq13840 Length=1178 Score = 109 bits (120), Expect = 3e-22 Identities = 95/117 (81%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| || | |||||| | | | || || || | || Sbjct 550 GAACCCAAAGACTTTGATTTCTCTTACGATGCCGAAAGGGACTAATATATTACC-CTTCC 608 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||| |||||||| |||||||||||||||||||||||||||||| || Sbjct 609 GATCTCGAGTCGGTATAGTTTATAGTTAAGACTACGACGGTATCTGATCGTCTTTGA 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278267388510