Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq30101 181 4e-43 seq46395 161 4e-37 >seq30101 Length=1385 Score = 181 bits (200), Expect = 4e-43 Identities = 185/237 (78%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAA-C 466 ||||||||| |||||||||||||||||||| || ||||||| || ||||| ||| | Sbjct 1148 CCCGTCTTGAAACACGGACCAAGGAGTCTACCACAAGTGCGAGTTTTAGGGTGGAAAAAC 1207 Query 467 CCGTGCGCGTAATGAAAGTGAACGGA-GGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 ||| ||| || |||||||| | |||| ||| |||| ||| ||| ||||| || | Sbjct 1208 CCGACGGCGCAACGAAAGTGAGTATAAGGTGCGAATCCGTAAGGAGGCAGCATCGGCCAA 1267 Query 526 TCCTGATGTCTTCGGATGGAT---TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | |||| | ||| ||| | ||||| |||||||| || | |||||||||||||| Sbjct 1268 CCTTGATTT--TCGAATGAAAGGATTGAGCAAGAGCATTTTTGGTAGGACCCGAAAGATG 1325 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||| || ||| ||||| |||||||| ||||||||||||||||||||| |||| Sbjct 1326 GTGAACTACGCTTGAGTAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGAAGCG 1382 Score = 140 bits (154), Expect = 1e-30 Identities = 125/156 (80%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| ||||||||||| |||||| ||||||||| |||| ||||||||||| Sbjct 732 TTCCAAGAGTCGGGTTGTTTGGGATTGCAGCCTAAAATGGGAGATAAACTTCTTCTAAAG 791 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || ||||||||| ||||||| || ||||||||||||| ||| Sbjct 792 CTAAATATTTATGGGAAACCGATAGCAAACAAGTACTACGAAGGAAAGATGAAAAGAACT 851 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 ||| |||||| ||||||| || |||||| ||||| Sbjct 852 TTGAAAAGAGGGTTAAAA--GACTTGAAATCGTTGA 885 >seq46395 Length=3700 Score = 161 bits (178), Expect = 4e-37 Identities = 212/287 (74%), Gaps = 14/287 (5%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||| |||||||||||||| || |||| | | | ||||| Sbjct 2245 CGACCCGTCTTGAAACACGGAACAAGGAGTCTAACAAATACGCGATTATGTTGGTGTTTG 2304 Query 464 -AACCCGTGC--GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520 || || ||| | | ||||||||| | ||| || || | | | |||| ||||| Sbjct 2305 TAAACCATGCATGAGCAATGAAAGTAAGCGG---TGCCAATCGC--AAGATGCAGCATCG 2359 Query 521 ACCGATCCTGATGTCTTCGG---ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577 |||||| || | || || | | ||| || |||| || ||||| ||||||||| Sbjct 2360 GCCGATCGTGC-GCCTCTGGCAAAACGTGTTGGCTACGAGCGTATCTGTTAGGACCCGAA 2418 Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT-CTGGTGGAGGCTCGCA 636 ||||||||||||| || || |||| ||||||| || |||| | ||| |||||| || | Sbjct 2419 AGATGGTGAACTACGCTTGGGTAGGATGAAGCCGGAAGAAATTCCTGTTGGAGGTCCGAA 2478 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||| ||||||||||| |||||||| ||| || ||||||||| Sbjct 2479 ACGGTACTGACGTGCAAATCGTTCGTCAAACTTGAGTGTAGGGGCGA 2525 Score = 118 bits (130), Expect = 4e-24 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 || || ||||||||||||| |||| ||||||||||| ||||||||| | |||| |||| | Sbjct 1859 TTTGAAGAGTCGAGTTGTTCGGGACTGCAGCTCTAAGTGGGAGGTAGACTTCTCCTAAGG 1918 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 ||||||| |||||||||||||| ||||||| |||| |||||||||||| Sbjct 1919 CTAAATAACTATGAGAGACCGATAGCGAACAAGTAATGTGAATGAAAGATGAAAA 1973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078910146950