Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq35950 178 2e-42 seq20133 170 3e-40 seq21152 152 7e-35 seq22555 143 4e-32 seq43636 136 5e-30 seq24946 100 4e-19 seq2809 98.7 1e-18 seq5548 95.1 2e-17 >seq35950 Length=2181 Score = 178 bits (196), Expect = 2e-42 Identities = 191/248 (77%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| Sbjct 669 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTACGG-CTTCGCAG 727 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||| ||||||||||||| ||| ||| ||| ||| | || | | Sbjct 728 AGCCCTGTGTTTTAGGTAAACAGTCGCTACCCCCTAGTCTGTGC------CCCCTGATG- 780 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || | || || ||| ||| | ||||||||||||||||||| | || |||||||| Sbjct 781 -CTGGTTGCCCAACACCAG-GGC-CTCCTTCTCCCGAAGTTACGGAGGCAATTTGCCGAG 837 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | ||| ||| | | | |||||| |||| ||||||| | |||||||||||||| Sbjct 838 TTCCTTCAGCACCATTCTCTCAAGCGCCTTGGTATGCTCTACCAGTCCACCTGTGTCGGT 897 Query 241 TTACGGTA 248 ||| |||| Sbjct 898 TTAGGGTA 905 >seq20133 Length=1753 Score = 170 bits (188), Expect = 3e-40 Identities = 165/211 (78%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| ||||||||| || |||| | || || |||| || || Sbjct 1542 CTTCCAGCACCGGGCAGGCGTCACTCCGTATACGTCCACTTTC-GTGTTGGCACAGAGCT 1600 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG- 125 |||||||| ||||||||||| || ||||||||||||||| | | ||||| ||| Sbjct 1601 GTGTTTTTGTTAAACAGTCGCAGCCACCTATTCTCTGCGACCTCTATCAGCTTCGGACGC 1660 Query 126 ----TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | |||| ||| ||||| ||||||||||||||||||| | || |||||||| | Sbjct 1661 GAAGTCCTACACCGACAGAGGCACACCTTCTCCCGAAGTTACGGTGTCAATTTGCCGAGT 1720 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAG 212 ||||| || ||||| | | | |||||||| Sbjct 1721 TCCTTCTCCTGAGTTCTCTCAAGCGCCTTAG 1751 >seq21152 Length=2898 Score = 152 bits (168), Expect = 7e-35 Identities = 182/248 (73%), Gaps = 17/248 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| || || | ||| ||| Sbjct 1320 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACTTCGCCTCACGG-CTTAGCAG 1378 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||||||| ||| ||| ||| ||| | || || Sbjct 1379 AGCCCTGTGTTTTTGGTAAACAGTCGCCACCCCCTAGTCTGTGCCCCTCTGACGAG---- 1434 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| ||| ||| |||||| |||||||||||||||| | ||||| | Sbjct 1435 -----------ACCGTCAGAGGC-CCCCTTATCCCGAAGTTACGGGGGTAAATTGCCTAG 1482 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || |||| | | | |||||| |||| ||||||| | |||||||||||||| Sbjct 1483 TTCCTTCAACATGGTTCCCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGT 1542 Query 241 TTACGGTA 248 ||| |||| Sbjct 1543 TTAGGGTA 1550 >seq22555 Length=2992 Score = 143 bits (158), Expect = 4e-32 Identities = 182/246 (74%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| |||||||| || ||||| | || |||| Sbjct 785 TTAACCTTCCGGCACCGGGCAGGTGTCACACCGTATACGTCCTCTTAC-GAGTTTGCACA 843 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || || || ||||||| | ||| | Sbjct 844 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTCACTGCGACTCTCCGATGCTTAC 903 Query 122 ----CACGTCGTTCACCAGCAGTG-GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || | ||||| | || | || ||||||||||||||||||| | ||||||| Sbjct 904 ACCGCAAGGGCTTCAC-ATTAGAGAGCGTACCTTCTCCCGAAGTTACGGTACTATTTTGC 962 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||| | | ||||| | | | |||||| ||||||||||||||||||||||||| Sbjct 963 CTAGTTCCTTCAGCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGT 1022 Query 237 CGGTTT 242 |||||| Sbjct 1023 CGGTTT 1028 >seq43636 Length=858 Score = 136 bits (150), Expect = 5e-30 Identities = 182/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| |||| || ||||||| Sbjct 339 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTA-CGGCTTCGCAG 281 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| ||| || || | ||| || || | Sbjct 280 AGCCCTGTGTTTTTGATAAACAGTCGCCACCCCCTGTTTTGTGC-CCCTCCCC------- 229 Query 121 ACACGTCGTT-CACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 |||| ||| | | | || | | |||| |||||||||||||| | || ||||||| Sbjct 228 -CACG--GTTGCCCGCGGAGGAGGCCTCCTTATCCCGAAGTTACGGAGGCAAATTGCCGA 172 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | ||||| |||| ||||||| | ||||| | ||||| Sbjct 171 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTAGGTATGCTCTACCAGTCCACCAGAGTCGG 112 Query 240 TTTACGGTA 248 ||| |||| Sbjct 111 TTTCGGGTA 103 >seq24946 Length=528 Score = 100 bits (110), Expect = 4e-19 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 369 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAG 427 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 | ||||||||||||||||||||||||| ||| || Sbjct 428 AGCCCTGTGTTTTTAGTAAACAGTCGCTACCCCCT 462 >seq2809 Length=5502 Score = 98.7 bits (108), Expect = 1e-18 Identities = 172/248 (69%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| | |||| || || ||| Sbjct 2877 CTTAACCTTCCAGCACCGGGCAGGCGTCAGGCCATATACTTTTTCTTA-CGAATTTGCAT 2819 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| ||| || | | || ||| || | Sbjct 2818 AGCCCTGTGTTTTTGATAAACAGTCGCCACCCCCTGCTATGTG---------CCACCTTA 2768 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | ||| | | ||| |||| |||||||||||||| || |||| | | Sbjct 2767 --CCTTAGTTGCCTAAGGAAGGCCATCCTTTTCCCGAAGTTACGGATGCAATTTGTCTAG 2710 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||| | | ||||||| |||| ||||||| | ||||| | |||||| Sbjct 2709 TTCCTTCAACATCATTCTCTC-CACGCCTTGGTATACTCTACCAGTCCACCAGAGTCGGT 2651 Query 241 TTACGGTA 248 || |||| Sbjct 2650 TTGGGGTA 2643 >seq5548 Length=810 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| ||||||| | ||||| ||| | || Sbjct 136 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCGACTTTC-GTCTTTGCAGAGTGCT 78 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACC 108 ||||||||| ||||||||||| || | |||||||||| || Sbjct 77 GTGTTTTTAATAAACAGTCGCAGCCACCGATTCTCTGCGGCC 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694058207857