Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq21152 114 1e-23 seq35950 87.8 2e-15 seq43636 82.4 8e-14 seq22555 75.2 1e-11 >seq21152 Length=2898 Score = 114 bits (126), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| || | | |||| Sbjct 1544 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGGGAACCATGTTGAAGG 1485 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCC-CT-ACCCAGAAATGGGAG 142 |||||||||| | ||| ||||||||||||||| ||| || || || | ||| Sbjct 1484 AACTAGGCAATTTACCCCCGTAACTTCGGGATAAGGGGGCCTCTGACGGTCTCGTCAGAG 1425 Query 143 GGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||| ||| |||| ||| |||||||| ||||||||||||||| ||| || Sbjct 1424 GG-GCACAGACTAGGGGGTGGCGACTGTTTACCAAAAACACAGGGCTCTGCTAA 1372 >seq35950 Length=2181 Score = 87.8 bits (96), Expect = 2e-15 Identities = 128/182 (70%), Gaps = 13/182 (7%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| |||||||||||| |||| | | |||| Sbjct 899 AAACCGACACAGGTGGACTGGTAGAGCATACCAAGGCGCTTGAGAGAATGGTGCTGAAGG 840 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT----------ACCCAGA 134 |||| |||||| || | | |||||||||||| || | | |||| | |||| Sbjct 839 AACTCGGCAAATTGCCTCCGTAACTTCGGGAGAAGGAGGCCCTGGTGTTGGGCAACCAGC 780 Query 135 AATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCC 194 | |||| ||| ||| |||| || |||||||| | ||||||||||||| ||| Sbjct 779 A---TCAGGGGGCACAGACTAGGGGGTAGCGACTGTTTACCTAAAACACAGGGCTCTGCG 723 Query 195 AA 196 || Sbjct 722 AA 721 >seq43636 Length=858 Score = 82.4 bits (90), Expect = 8e-14 Identities = 128/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| ||| | || | | ||| || |||| ||||||||||| ||| | | | |||| Sbjct 109 AAACCGACTCTGGTGGACTGGTAGAGCATACCTAGGCGCTTGAGAGAACGATGCTGAAGG 168 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA--AGGGTCCCTACCCAG--AA--ATG 138 |||| ||||| || | | ||||||||||||||| ||| ||| | | | || || Sbjct 169 AACTCGGCAATTTGCCTCCGTAACTTCGGGATAAGGAGGCCTCCTCCGCGGGCAACCGTG 228 Query 139 GGAG-GGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || | || ||| | || ||| ||| |||||||| ||||||||||||||| ||| || Sbjct 229 GGGGAGGGGCACAAAACAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTCTGCGAA 287 >seq22555 Length=2992 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTT-AAG 83 |||| |||||| || ||| ||| || |||| |||||||||||| ||| | ||| | ||| Sbjct 1028 AAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAA-CTCGGCTGAAG 970 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| | | |||||||||||| || Sbjct 969 GAACTAGGCAAAATAGTACCGTAACTTCGGGAGAA 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530938536886