Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq5548 147 2e-33 seq22555 141 9e-32 seq20133 134 1e-29 seq43636 109 5e-22 seq24946 109 5e-22 seq35950 100 3e-19 seq21152 95.1 1e-17 seq2809 87.8 2e-15 >seq5548 Length=810 Score = 147 bits (162), Expect = 2e-33 Identities = 89/94 (95%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 54 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAAGACGAAAGTCGACGTATAGGGTG 113 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 114 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 147 >seq22555 Length=2992 Score = 141 bits (156), Expect = 9e-32 Identities = 98/111 (88%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 48 GTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAA 107 |||| || ||||| ||||| |||||||||||||||||||||||| ||||||| || | Sbjct 889 GTCGCAGTGACCAGCTGGCTGCAACTGTTTATTAAAAACACAGCACTGTGCAAACTCGTA 830 Query 108 AGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 || ||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 829 AGAGGACGTATACGGTGTGACACCTGCCCGGTGCCGGAAGGTTAATTGATG 779 >seq20133 Length=1753 Score = 134 bits (148), Expect = 1e-29 Identities = 115/138 (83%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 23 GGACTT-GC-TCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATT 80 |||||| || |||| ||||| || ||||| ||| | ||| |||||||||||||| Sbjct 1667 GGACTTCGCGTCCG-AAGCTGATAGAGGTCGCAGAGAATAGGTGGCTGCGACTGTTTAAC 1609 Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140 ||||||||||| || ||| |||||||||||||||||||| || ||||||||||||||||| Sbjct 1608 AAAAACACAGCTCTGTGCCAACACGAAAGTGGACGTATACGGAGTGACGCCTGCCCGGTG 1549 Query 141 CCGGAAGGTTAATTGATG 158 | ||||| |||| ||||| Sbjct 1548 CTGGAAGATTAAATGATG 1531 >seq43636 Length=858 Score = 109 bits (120), Expect = 5e-22 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| |||||| || || ||| |||||||||||| ||| Sbjct 254 GCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGTATAGGGTCTGA 313 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 314 CGCCTGCCCGGTGCCGGAAGGTTAA 338 >seq24946 Length=528 Score = 109 bits (120), Expect = 5e-22 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || || ||| |||||||||||| ||| Sbjct 454 GCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGTATAGGGTCTGA 395 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 394 CGCCTGCCCGGTGCCGGAAGGTTAA 370 >seq35950 Length=2181 Score = 100 bits (110), Expect = 3e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||| |||||| || || ||| |||||||||||| ||| Sbjct 754 GCGACTGTTTACCTAAAACACAGGGCTCTGCGAAGCCGTAAGGCGACGTATAGGGTCTGA 695 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 694 CGCCTGCCCGGTGCCGGAAGGTTAA 670 >seq21152 Length=2898 Score = 95.1 bits (104), Expect = 1e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| || || || || ||||||||| ||| Sbjct 1405 GCGACTGTTTACCAAAAACACAGGGCTCTGCTAAGCCGTGAGGCGAAGTATAGGGTCTGA 1346 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||||||||||||||| Sbjct 1345 CGCCTGCCCGGTGCCGGAAGGTTAA 1321 >seq2809 Length=5502 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||| | | ||| |||| | |||||||||||| |||||||||| || |||||| || Sbjct 2771 GGTGGCACATAGCAGGGGGTGGCGACTGTTTATCAAAAACACAGGGCTATGCAAATTCGT 2830 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||||| || ||||||||||||||||| |||||||||| Sbjct 2831 AAGAAAAAGTATATGGCCTGACGCCTGCCCGGTGCTGGAAGGTTAA 2876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476565313229