Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq13840 280 2e-73 seq46395 266 5e-69 >seq13840 Length=1178 Score = 280 bits (310), Expect = 2e-73 Identities = 210/244 (86%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| Sbjct 182 GTCAGTGTAGCGCGCGTGCGGCCCAGGACGTCTAGGGGCATCACAGACCTGTTATTGCCT 241 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 |||||||||| || | || |||||||||||||||| | ||| | | Sbjct 242 TAAACTTCCATGCACTTACATACA-TAGTCCCTCTAAGAAGTTAT--ACCTGTTGTTCAC 298 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 AAGCAAACTAGTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 358 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 359 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTTTCAATC 418 Query 255 TGTC 258 |||| Sbjct 419 TGTC 422 >seq46395 Length=3700 Score = 266 bits (294), Expect = 5e-69 Identities = 220/264 (83%), Gaps = 12/264 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 872 TCAGTGTAGCACGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTC 813 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG----CCAGCCACCAACCATA 131 |||||||| | | | | | ||| ||||||||||||||| | || | | | | Sbjct 812 AAACTTCCTTGTGGTTGCACACAA-AGTCCCTCTAAGAAGTTGTCAAGTCTTATAGAAAA 754 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT-ATCGGAATTAACCAGACAAA 190 | ||| | |||||||||||| | |||||||||||||| | ||||||||||||||| || Sbjct 753 GGCGA-GCAACTATTTAGCAGGCTGAGGTCTCGTTCGTTTAACGGAATTAACCAGACGAA 695 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACC-----ACCCATAGAATCAAGAAAGAG 245 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 694 TCACTCCACGAACTAAGAACGGCCATGCACCACCAAAATACCCATAGAATCAAGAAAGAG 635 Query 246 CTATCAATCTGTCCTCCCTCGATA 269 ||||||||||||| ||||| || Sbjct 634 CTATCAATCTGTCAATCCTCGCTA 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796407805329