Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq42457 343 3e-92 seq46396 257 3e-66 seq37589 120 5e-25 seq22555 82.4 1e-13 >seq42457 Length=2349 Score = 343 bits (380), Expect = 3e-92 Identities = 236/266 (89%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1063 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1004 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| |||||||||||||| ||||||||||||||||| Sbjct 1003 TTAGCGGGTGAACAATCCGACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 944 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 943 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 884 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGC---CTCAAATTTCGAGGGACTAAAGGATCGAT 267 ||||||||||||||||| |||||||||| || | | | || ||||||||||| Sbjct 883 CTGTGGTAACTTTTCTGACACCTCTAGCTATAGCACTTATTCATAAACAAAAGGATCGAT 824 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||||| ||| | |||| Sbjct 823 AGGCCATGCTTTCGCAGTTCGAATTC 798 >seq46396 Length=793 Score = 257 bits (284), Expect = 3e-66 Identities = 174/194 (90%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| | ||||| ||| ||| | | | |||||||||||||||||||||||||| Sbjct 194 TACTAAGTTGGATTACTGTTGAGGCATCACTTAATCAGTAGGGTAAAACTAACCTGTCTC 135 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| ||||||||||||| || ||| || Sbjct 134 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACACTTGGCG 75 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 15 Query 180 TGAACGCTTGGCTG 193 |||||||||||||| Sbjct 14 TGAACGCTTGGCTG 1 >seq37589 Length=1893 Score = 120 bits (132), Expect = 5e-25 Identities = 86/98 (88%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||||||||||||||||||||||||||||| |||||||||| | ||| || | | Sbjct 1893 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTAAAACTTGTAAAG-T 1835 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||||||| |||||| ||||||||||| Sbjct 1834 TAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTC 1797 >seq22555 Length=2992 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 35 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 94 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 95 CTTGGGACCGACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 151 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 152 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853965887904