Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq21152 217 3e-54 seq35950 203 8e-50 seq2809 201 3e-49 seq25966 188 2e-45 seq22555 187 6e-45 seq18145 165 2e-38 seq41881 163 7e-38 seq42319 159 8e-37 >seq21152 Length=2898 Score = 217 bits (240), Expect = 3e-54 Identities = 304/416 (73%), Gaps = 28/416 (7%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || ||||| |||||| ||||| |||||| ||| || |||| | || || || | | Sbjct 1674 CGTCTACGGCTGTCGCCCTCGACTTAGGGGCCGGCTAACCCTGCGCGGATTGACCTTGCG 1733 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||||||||||| ||||| | | | || ||| | | | ||||||| ||| | Sbjct 1734 CAGGAACCCTTGGACTTACGGCGAAAGCGTCTCTCACGCTTTTTATCGCTACTTATGTCA 1793 Query 120 GCATTCTCACTCGCATCAACTCCA-----CCACACAG-TCACCCG--GCAG-CTTCACCA 170 ||||||||||| | | ||||| || ||| | || ||| |||| ||| | Sbjct 1794 GCATTCTCACTTCCGATACCTCCAGGAGCCCTCACGGGTCTCCCTTCGCAGGCTT----A 1849 Query 171 CTGACACGACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 | || ||||||| ||||| | | | || || ||||||||| | || ||| | Sbjct 1850 CGGA----ACGCTCCGCTACC-ACTCTTTCGAGT--CCGCAGCTTCGGTGCATGGCTTGA 1902 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCT 285 |||||| ||||| ||||||| | || ||| ||||||||||||||||||| ||| Sbjct 1903 GCCCCGGTACATCTTCGGCGCAGGATTTCTTAATTAGACCAGTGAGCTATTACGCTTTCT 1962 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT-CCACATCCTTT 344 || ||||||||||||||| ||||||||||||||||||| || | || | ||||||||||| Sbjct 1963 TTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGT-TATGGAATTCCCACATCCTTT 2021 Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||| || || |||||||| ||||||||| | |||||||||||||||||||| Sbjct 2022 CCCACTTAGCCATGACTTAGGGACCTTAGCTGGCGGTCTGGGCTGTTTCCCTCTCG 2077 >seq35950 Length=2181 Score = 203 bits (224), Expect = 8e-50 Identities = 297/414 (72%), Gaps = 26/414 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||||||||||||| ||| || |||| | ||||| | ||| || Sbjct 1027 CGACTACGCCTTTCGGCCTCGCCTTAGGAGCCGGCTAACCCTGCGCAGATTAGCTTTACG 1086 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| | || || |||||||| | Sbjct 1087 CAGGAACCCTTGGACTTTCGGCGACAGTGTCTCTCACACTGTTTGTCGTTACTCATGTCA 1146 Query 120 GCATTCTCACTCGCATCAACTCCACCA-----CAC-AGTCACCCG--GCAG-CTTCACCA 170 |||||| |||| | | ||||| | ||| |||| ||| |||| ||| | Sbjct 1147 GCATTCGCACTTCCGATACCTCCAGGAGCTCTCACGAGTCTCCCTTCGCAGGCTT----A 1202 Query 171 CTGACACGACGCTCCCCTACCCAACCACACAGGTTGC---CACAGCTTCGGCGGATAACT 227 | || ||||||| ||||| || || | | |||||||||| || || Sbjct 1203 CGGA----ACGCTCCGCTACCGCGTGACTTGCGTCACACCCGCAGCTTCGGCACATGGCT 1258 Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCAC 282 | ||||||| |||||| ||||||| | | | |||| ||||||||||| |||||| Sbjct 1259 TGAGCCCCGTTACATTGTCGGCGCAGGAACCCTTGTCTAGACCAGTGAGCTGTTACGCTT 1318 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 ||||| || |||||||||||| |||||||| |||||||||| | | | | ||||||||| Sbjct 1319 TCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGGGATCCCCACATCCT 1378 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||| |||| || || | || ||||||||||||| | || ||| ||||||||| Sbjct 1379 TTCACACTTAGCCATGATTTGGGGGCCTTAGCTGGCGGTCAGGGTTGTTTCCCT 1432 >seq2809 Length=5502 Score = 201 bits (222), Expect = 3e-49 Identities = 295/412 (72%), Gaps = 13/412 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||| ||||||| |||||||| ||||||| ||| || |||| | | ||| ||||| || Sbjct 2520 CGATTACGCCTTTCGGCCTCACCTTAGGGACCGGCTAACCCTGCGTAGATTAACTTTACA 2461 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCAC-ACGCTACTCATGCCT 119 | |||||||||||| |||||||| | | || ||| | || |||||||| ||| | Sbjct 2460 CAGGAACCCTTGGACTTTCGGCGGAAGTGTTTTTCACACTTCTTTACGCTACTTATGTCA 2401 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 |||||||| || | | ||||| | || | || || |||||| || |||| Sbjct 2400 GCATTCTCGCTTGTGATACCTCCAGCGTACCTT-ACGATACACCTTCACAGGCTTACACA 2342 Query 179 ACGCTCCCCTACC-----CAACCACACAGGTTG--CCACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| || | || || || | |||||| || || || Sbjct 2341 ACGCTCCGCTACCGCTTACATGTAATCATGTAAGCCCGCGTCTTCGGTATATGGTTTGAG 2282 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTT---GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| ||||| || ||| |||||||| |||||| ||||| Sbjct 2281 CCCCGATACATTTTCGGCGCAGAATCGCTATTAGACTAGTGAGCTGTTACGCTTTCTTTA 2222 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| ||||||||||||| |||| || ||| || |||||||||| || Sbjct 2221 AAGGGTGGCTGCTTCTAAGCCAACCTCCTAATTGTTTAGGCATTTCTACATCCTTTCACA 2162 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || | || | || ||| |||||| | | |||||||| ||||||||||| Sbjct 2161 CTTAACCATAATTTGGGGACCTTAGACGGCGGTCTGGGCTATTTCCCTCTCG 2110 >seq25966 Length=3938 Score = 188 bits (208), Expect = 2e-45 Identities = 290/405 (72%), Gaps = 9/405 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| ||||||||||| || || ||| | | Sbjct 3678 CGACTACGCTTTTCAGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCG 3619 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| |||||| |||| || |||||| | ||||||||||| | Sbjct 3618 TAGGAAACCTTGGGCTTTCGGCGAGCGGGCTTTTCACCCGCTTTATCGCTACTCATGTCA 3559 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 |||||| |||| | || | ||||| || | || || |||||| || ||| Sbjct 3558 GCATTCGCACTTCTGAT-ATCTCCAGCAGGGTTTACACCACCACCTTCACAGACCTACAG 3500 Query 178 GACGCTCCCCTACC---CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| || | | | | || ||||||||| | || ||||| Sbjct 3499 AACGCTCCCCTACCACGCATATAAATATGCATCCGCAGCTTCGGTTATCAGTTTGAGCCC 3440 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | | ||| ||||||||||||||||||| ||||| || ||| Sbjct 3439 CGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATGAT 3380 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC-TGAG 353 ||||||||| |||||||| |||||| |||||| || |||| || ||| |||| | | Sbjct 3379 GGCTGCTTCTAAGCCAACATCCTGGCTGTCTAGGCCTTCCCACCTCGTTTACCACTTAAC 3320 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || || ||| ||||||||| | |||||| ||||||||||| Sbjct 3319 TGATCA-TTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 3276 >seq22555 Length=2992 Score = 187 bits (206), Expect = 6e-45 Identities = 290/406 (71%), Gaps = 15/406 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | || | | || Sbjct 1256 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTTACCCTACCCTGATTAGCATGGGA 1315 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| |||||| || || ||||| | | || |||||||| | Sbjct 1316 TAGGAACCCTTGGTCTTCCGGCGGGGAGGTTTTTCACCCCCCTTATCGTTACTCATGTCA 1375 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| | || |||| | || ||| Sbjct 1376 GCATTCGCACTTCTGAT-ACCTCCAGCATCCC-TCACGAGACACCTTCGCAGGCTTACAG 1433 Query 178 GACGCTCCCCTACC-------CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 ||||||| ||||| ||| |||| || |||||||||||| | || || | Sbjct 1434 AACGCTCCTCTACCACTTGTGCAAAG-CACAAGT--CCACAGCTTCGGTGCATGGTTTTA 1490 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| || Sbjct 1491 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAA 1550 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| ||||||||||||| | |||||| || ||||||| ||| ||||| Sbjct 1551 GGGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACATCGTTTTCCACT 1610 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || |||| ||| ||||||||| || |||||| ||||||||| Sbjct 1611 TAACCATGACTTTGGGACCTTAGCTGGTGGTCTGGGTTGTTTCCCT 1656 >seq18145 Length=1127 Score = 165 bits (182), Expect = 2e-38 Identities = 289/408 (71%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 825 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 766 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGCA 122 ||| ||||| |||||| ||| || ||||| | |||||||||||| | ||| Sbjct 765 GAAACCTTGCGCTTTCGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGCA 706 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || | |||| || |||||| || ||| || Sbjct 705 TTCGCACTTCTGAT-ACCTCCAGCAGGCT-TCACAACCCACCTTCACAGGCTTACAGAAC 648 Query 181 GCTCCCCTACC-CAACCACACAGGTTGC-----CACAGCTTCGGCGGATAACT---TAAG 231 |||| |||||| | || | | |||| | ||||||||| ||||| | || Sbjct 647 GCTCTCCTACCACTTGCA-ATAAATTGCACATCCGCAGCTTCGG----TAACTGGCTTAG 593 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 592 CCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAT 533 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 532 GATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTT 473 Query 352 AGTCACCACTTAGGGG-CCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || | || |||| ||||||||| | |||||| ||||||||||| Sbjct 472 AGCCA--ATTTTGGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 427 >seq41881 Length=496 Score = 163 bits (180), Expect = 7e-38 Identities = 260/366 (71%), Gaps = 14/366 (4%) Strand=Plus/Plus Query 45 GCAGACAAACTTGACCCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC--CCGTC 102 ||||| | ||| || | |||||||||||| ||||||| | | || ||| || | Sbjct 6 GCAGATTAGCTTTACGCAGGAACCCTTGGACTTTCGGCGGGGGTGTCTCTCACACCCCTT 65 Query 103 ACACGCTACTCATGCCTGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CA 161 | || |||||||| | ||||||||||| | | |||||| | | |||| | | Sbjct 66 TC-CGTTACTCATGTCAGCATTCTCACTTCCGATACCTCCACGGCCCC-TCACGGGTACC 123 Query 162 GCTTCACCA-CTGACACGACGCTCCCCTACCCAACCACACAGGTTGC---CACAGCTTCG 217 ||||||| || || ||||||| ||||| | | | ||| | |||||||| Sbjct 124 GCTTCACAGGCTTACGGAACGCTCCGCTACCGCGCATCTTGCGATGCACCCGCAGCTTCG 183 Query 218 GCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGC 272 || | ||| ||||||| |||||| ||||||| | | ||| ||||||||||| Sbjct 184 GCACGTGGCTTGAGCCCCGATACATTGTCGGCGCAAGAACCCTTATCTAGACCAGTGAGC 243 Query 273 TATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAAC 332 | |||||| ||||| || |||||||||||| |||||||| |||||||||| | | | Sbjct 244 TGTTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGGGATT 303 Query 333 TCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392 ||||||||||| |||| || ||| | || ||||||||||||| | || ||| ||||| Sbjct 304 CTCACATCCTTTCACACTTAGCCACGATTTGGGGGCCTTAGCTGGCGGTCAGGGTTGTTT 363 Query 393 CCCTCT 398 |||||| Sbjct 364 CCCTCT 369 >seq42319 Length=3671 Score = 159 bits (176), Expect = 8e-37 Identities = 151/193 (78%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACC 265 ||||||||| | ||| ||||||| ||||| ||| ||| | | ||| |||| Sbjct 3245 AGCTTCGGCTCGTGGCTTGAGCCCCGTTACATCTTCGCCGCAGGACAGCTTATCTAGACC 3186 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 3185 AGTGAGCTGTTACGCTATCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTT 3126 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 || |||||| |||||||||| || ||| | |||||||||||||||| | || || Sbjct 3125 TGGCCGTCCCACATGCTTTCCCACTTAGCCACGAATTAGGGGCCTTAGCTGCAGGTCAGG 3066 Query 386 GCTGTTTCCCTCT 398 | ||||||||||| Sbjct 3065 GTTGTTTCCCTCT 3053 Score = 84.2 bits (92), Expect = 5e-14 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| | ||| | Sbjct 3514 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCTCAGATTAGCTTTAAG 3455 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| ||| || ||||| || ||||||||||| | Sbjct 3454 CAGGAACCCTTGGACTTTCGGCGACAGGGTCTCTCACCCTGTTTGTCGCTACTCATGTCA 3395 Query 120 GCATTCTCACT 130 ||||||| || Sbjct 3394 ACATTCTCGCT 3384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177001673216