Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq5550 223 3e-56 seq25966 219 4e-55 seq38752 197 1e-48 seq36788 118 9e-25 seq42319 102 7e-20 seq5849 100 2e-19 >seq5550 Length=2568 Score = 223 bits (246), Expect = 3e-56 Identities = 146/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1261 TCGAGTTGCAGACTACGATCCGGACTACGACCGGGTTTCTGGGATTAGCTCCCCCTCGCG 1320 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1321 GGTTGGCAGCCCTCTGTCCCGGCCATTGTATGACGTGTGTAGCCCTACCCATAAGGGCCA 1380 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1381 TGATGACCTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1421 >seq25966 Length=3938 Score = 219 bits (242), Expect = 4e-55 Identities = 145/161 (90%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| |||||||||||||||| |||| | |||||||||| ||||||| Sbjct 1515 TCGAGTTGCAGACTCCAATCCGGACTACGATCGGCTTTAAGAGATTAGCTCCACCTCGCG 1456 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | ||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 1455 GTTTGGCAACCCTCTGTACCGACCATTGTATGACGTGTGAAGCCCTGCTCATAAGGGCCA 1396 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1395 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1355 >seq38752 Length=1498 Score = 197 bits (218), Expect = 1e-48 Identities = 136/154 (88%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| ||| ||||||||||||||||||||| Sbjct 1345 TCGAGTTGCAGACTGCGATCCGGACTACGACTGGTTTTATGGGATTAGCTCCCCCTCGCG 1404 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| |||| |||| ||||||||||||||||| ||||| ||| |||||||||| Sbjct 1405 GGTTGGCAACCCTTTGTACCAGCCATTGTATGACGTGTGTAGCCCCACCTATAAGGGCCA 1464 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 |||||||||||||||||||||||||||||||||| Sbjct 1465 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGT 1498 >seq36788 Length=1761 Score = 118 bits (130), Expect = 9e-25 Identities = 126/163 (77%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGG-ATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || | ||| |||| || ||||| |||| Sbjct 799 TCGAGTTGCAGAGTGCAATCCGAACTGGGA--CGGTTTTTGGGGATCGGCTCCGGGTCGC 856 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || || ||| |||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 857 CCCTTCGCATCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 916 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||||||||||||| ||| || |||| Sbjct 917 ATGAGGACTTGACGTCATCCCCACCTTCCTCTCGGCTTATCAC 959 >seq42319 Length=3671 Score = 102 bits (112), Expect = 7e-20 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 82 ACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCC 141 ||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||| | Sbjct 1165 ACCATTGTAGCACGTGTGTAGCCCAACCCGTAAGGGCCATGAGGACTTGACGTCATCCAC 1106 Query 142 ACCTTCCTCCGGTTTGTCA 160 ||||||||||| || ||| Sbjct 1105 ACCTTCCTCCGACTTATCA 1087 >seq5849 Length=3646 Score = 100 bits (110), Expect = 2e-19 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| ||||||||| ||| || || |||| ||||| ||||| || | Sbjct 3286 CGAGTTGCAGGGTACAATCCGAACT--GAGACGGCTTTTATGGATTTGCTCCAGGTCACC 3229 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| ||| |||||||| ||||||| ||||| || ||||||||| Sbjct 3228 CTATTGCACCCCATTGTCACCGCCATTGTAACACGTGTGTAGCCCAGGCCGTAAGGGCCA 3169 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||||||||||||||||| || |||| Sbjct 3168 TGCTGACTTGACGTCATCCCCACCTTCCTCCGGCTTATCAC 3128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415795239730