Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq20133 185 6e-45 seq35950 176 3e-42 seq5548 167 2e-39 seq22555 145 5e-33 seq2809 129 4e-28 seq21152 109 4e-22 >seq20133 Length=1753 Score = 185 bits (204), Expect = 6e-45 Identities = 125/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| Sbjct 961 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGTCCTG 1020 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| | ||||||| | |||| |||||||||||||||||| Sbjct 1021 CTTTCGCACCTGCTCGACTTGTCGGTCTCGCAGTTAAGCTACCTTTTGCCATTGCACTAT 1080 Query 121 CACTACGATTTCCGACCGTA 140 || |||||||||||||||| Sbjct 1081 CAGCACGATTTCCGACCGTA 1100 >seq35950 Length=2181 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| Sbjct 94 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTG 153 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||||||||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 154 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 213 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 214 CGTCACGATGTCCGACCGTA 233 >seq5548 Length=810 Score = 167 bits (184), Expect = 2e-39 Identities = 121/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | ||||||||||||| || ||| Sbjct 717 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTTTGTCCTA 658 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| ||||||| |||||||| ||| ||||| |||||||| Sbjct 657 CTTTCGTACCTGCTCGACTTGTCAGTCTCGCAGTCAAGCACGCTTATGCCAATGCACTAT 598 Query 121 CACTACGATTTCCGACCGTA 140 || |||||||||||||||| Sbjct 597 CAACACGATTTCCGACCGTA 578 >seq22555 Length=2992 Score = 145 bits (160), Expect = 5e-33 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 199 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 258 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | ||| ||||||| | |||| ||| |||| |||||||| Sbjct 259 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTTAAGCTGGCTTCTGCCTTTGCACTAA 318 Query 121 CACTACGATTTCCGACCGTA 140 | |||||| |||||||||| Sbjct 319 CCGTACGATGTCCGACCGTA 338 >seq2809 Length=5502 Score = 129 bits (142), Expect = 4e-28 Identities = 112/138 (81%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||| ||||||||||||| || | ||||| ||||||||||||| Sbjct 3453 TACCTTTTATCCGTTGAGTGATGGCCCTTCCACACAGAACCACCAGATCACTATGACCGA 3394 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| ||| ||| |||||||||||| | Sbjct 3393 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCAAGCTTATGCCATTGCACTCT 3334 Query 121 CAC-TACGATTTCCGACC 137 || ||||||||||| Sbjct 3333 TACAGTTGATTTCCGACC 3316 >seq21152 Length=2898 Score = 109 bits (120), Expect = 4e-22 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| || | | |||||||||||||||| || Sbjct 745 TACCTTTTATCCGTTGAGCGATGGCCCACTCACGCGGAACCACCGGATCACTATGGCCGA 804 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| |||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 805 CTTTCGTCCCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTGTGCCATTGCACTCA 864 Query 120 TCACTACGATTTCCGACCG 138 || ||||||||||||| Sbjct 865 GCA-GCCGATTTCCGACCG 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351832330300