Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2809 304 2e-80 seq21152 269 4e-70 seq20133 266 5e-69 seq33017 217 2e-54 seq43925 206 4e-51 seq22555 179 6e-43 seq39564 149 1e-33 >seq2809 Length=5502 Score = 304 bits (336), Expect = 2e-80 Identities = 233/275 (85%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| ||||||||| |||||| ||||||||||| || ||||| ||||| Sbjct 3789 GAGGCGGGTTTCACACTTAGATGCATTCAGCGTTTATCCCTTCCGTACATAGCTACCCAG 3730 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||||||| ||||||||| |||||| ||| ||||| | |||||||||||||| Sbjct 3729 CGTTGCTCTTGGCAGAACAACTGGTACACCAGTGGTACGTCCAACTCGGTCCTCTCGTAC 3670 Query 122 TAAGGACAGCTCCTCTCAAATTTCCT-ACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| | ||| ||||||||| |||||| || |||||| | |||||||||||||||||||| Sbjct 3669 TAAAGTCAGATCCTCTCAATTTTCCTTACACCCACGGCAGATAGGGACCGAACTGTCTCA 3610 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||| ||| ||| || ||||||| ||||||||||| |||||||||||| Sbjct 3609 CGACGTTCTGAACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 3550 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| || ||| |||||||| Sbjct 3549 CTTCTCCAGCCCCAGGATGTGATGAGTCGACATCG 3515 >seq21152 Length=2898 Score = 269 bits (298), Expect = 4e-70 Identities = 224/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| |||||||||| || ||||| ||| | Sbjct 410 GAGGCGGGTTTCACGCTTAGATGCTTTCAGCGTTTATCCCTTCACTACATAGCTACCCGG 469 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | | | |||| | ||| ||| |||||||||| |||||||||||||||||||||| Sbjct 470 CGCTACGGCTGGCGCCATAACCGGTACACCAGAGGTAAGTCCATCCCGGTCCTCTCGTAC 529 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||||||| ||||||||||| | || || ||||| | |||||||||| ||||||||| | Sbjct 530 TAAGGACGGCTCCTCTCAAGTCTCGAACACCCACAGCAGATAGGGACCAAACTGTCTCAC 589 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||| |||||||| ||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 590 GACGTTTTGAACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 649 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || ||| |||||||| Sbjct 650 TGCTCCAGCCCCAGGATGTGATGAGTCGACATCG 683 >seq20133 Length=1753 Score = 266 bits (294), Expect = 5e-69 Identities = 215/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| ||||||||| ||| || |||| |||| Sbjct 640 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGCGATGCGACTGGCG 699 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| || Sbjct 700 TCACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCC 759 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| |||| |||||||| | |||||||||| ||||||||| ||||||| ||||||| Sbjct 760 GTCAAACTTCCAACGCCCACTGCAGATAGGGACCAAACTGTCTCACGACGTTTTGAACCC 819 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||| ||||||||||| |||||||||||| || ||||||||| Sbjct 820 AGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 879 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 880 GATGTGATGAGCCGACATCG 899 >seq33017 Length=670 Score = 217 bits (240), Expect = 2e-54 Identities = 176/213 (83%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| || |||||||| ||| | Sbjct 458 GAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGACCGTACTTAGCTACCCTG 517 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 |||||| |||| ||||| ||| |||||||||| ||||| |||||||||||||||| Sbjct 518 CTATGCGGCTGGCGCCACAACAGGTCCACCAGAGGTACGTCCACCCCGGTCCTCTCGTAC 577 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||||| ||| ||||||||| | |||||| |||||| | |||||||||| ||||||||| | Sbjct 578 TAAGGGCAGATCCTCTCAAGTCTCCTACACCCACGGCAGATAGGGACCAAACTGTCTCAC 637 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAA 214 ||||||||||||||| ||| ||| || |||||| Sbjct 638 GACGTTCTGAACCCAACTCACGTACCACTTTAA 670 >seq43925 Length=675 Score = 206 bits (228), Expect = 4e-51 Identities = 159/189 (84%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| ||| ||| |||||||||| |||||| ||||||| ||| || ||||| ||| Sbjct 487 CGAGGTGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTACGTAGCTACCCT 546 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || |||| |||| ||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 547 GCAATGCGGCTGGCGCCACAACAGGTCCACCAGAGGTACGTCCATCCCGGTCCTCTCGTA 606 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 |||||||||| ||||||||| |||||||| |||||| | |||||||||||||||||||| Sbjct 607 CTAAGGACAGATCCTCTCAATTTTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCA 666 Query 181 CGACGTTCT 189 ||||||||| Sbjct 667 CGACGTTCT 675 >seq22555 Length=2992 Score = 179 bits (198), Expect = 6e-43 Identities = 122/137 (89%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 139 AAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGC 198 |||| ||| ||||||||| | |||||||||||||||||||| ||||||||| |||||||| Sbjct 1 AAATCTCCAACGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGC 60 Query 199 TCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 |||||| || |||||| ||||||||||| |||||||||||| |||||||||||||||| Sbjct 61 TCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGACTTCAGCCCCAGGAT 120 Query 259 GAGACGAGCCGACATCG 275 | || |||||||||||| Sbjct 121 GTGATGAGCCGACATCG 137 >seq39564 Length=704 Score = 149 bits (164), Expect = 1e-33 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| |||||||| | | || |||| |||| Sbjct 187 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGCACTTAGCTACTCGGCAATGCCACTGGCG 128 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| | | |||||||||| ||||| ||||||||||||||||| | ||| || Sbjct 127 TGACAACCGATACACCAGAGGTGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTCT 68 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || | |||||||| |||||||||| ||||||||| ||||||| | ||||| Sbjct 67 CTCAATCTTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 8 Query 196 AGCTC 200 ||||| Sbjct 7 AGCTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780415680724