Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq37589 549 6e-154 seq42457 488 2e-135 seq2809 75.2 4e-11 >seq37589 Length=1893 Score = 549 bits (608), Expect = 6e-154 Identities = 443/534 (83%), Gaps = 15/534 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1763 CTTTTGGTCTACACGAGATTTCTGTTCTCGTTGAGCTCACCTTAGGACACCTGCGTTACC 1704 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 | |||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 1703 TTATAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACCATGTCTTCCACGAAGGTC 1644 Query 127 GGCCC-----GCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTT- 180 | | ||| ||||| || ||||| || | | |||| || || Sbjct 1643 GAGCAAACTTGCGTTCACCCTTAGAGCAAGAAACTGT-------AAAACAGTCCCCTTTT 1591 Query 181 -CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 || || |||| |||| || ||| |||||||| || || |||| | |||| Sbjct 1590 TCACGGAATAAGCAAAATTACTTGAAGAGTAGTGGTTTTACAGGATCGCCTTT-CAGCTC 1532 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| || ||| ||| || || ||||||||||||| ||||||||||||||||||||| Sbjct 1531 CCACCTAGGCTATACCACTTCAGCAATTTCACAAAGTCAGACTAGAGTCAAGCTCAACAG 1472 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1471 GGTCTTCTTTCCCCGCTGATTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 1412 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1411 GTAGATAGGGACAGTGGGAATCTCATTGATCCATTCATGCGCGTCACTAATTAGATGACG 1352 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1351 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTG 1292 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| ||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1291 AATTACTTCAACTTGACATTCAGAGCACTGGGCAGAAATCACTTTGTGTCAACA 1238 >seq42457 Length=2349 Score = 488 bits (540), Expect = 2e-135 Identities = 446/562 (79%), Gaps = 42/562 (7%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 |||| || ||| |||||||| |||||| |||| |||| ||||||||||||||| | Sbjct 745 TTTTAGTCAACAAGAGATTTCCGTTCTCTTTGAGCTTACCTTGGGACACCTGCGTTATTG 686 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 |||| ||||||||||||||||||||||||||||||||||| ||||| || | | ||| Sbjct 685 TTTAGCAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACCATGTCTTCCGCGCTACTCG 626 Query 128 -GCCCGCGAAGGAC----CTTAACGCCAGAA----------AATGGTCGGTGAAGACCAG 172 || || || | |||| || |||| | ||| | ||| | | | | Sbjct 625 CGCTAGCCGAGACCAGCGCTTAGAGCTAGAACCACTCAAGGAGTGGACTGTGTATAACGG 566 Query 173 T-TCCGCTTCATTGATTAAGTaaaaa---aaCGATAAGGGTAGTGGTATTTCACTTGCGC 228 | | || | |||| ||| | ||| | |||||||||||||| ||| || Sbjct 565 AATAAGTAAGATAAAATAAGGCAAATGTTACCGAAA---GTAGTGGTATTTCATTTGTGC 509 Query 229 CGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG-TCGGACTAGAGT 287 |||| |||||||| | | ||||||| ||| ||||||||| ||| |||||||||||| Sbjct 508 CGAA---GCTCCCACCTCTACTACACCAATCAGTTCATTTCACGAAGGTCGGACTAGAGT 452 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 451 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGG 392 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 GTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 332 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 331 AATTAGATGACGAGGCATTTCGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 272 Query 468 CGCGCTTGGTTGAATTT----------------CTTCACTTTGACATTCAGAGCACTGGG 511 |||||||| |||||||| || || ||| ||||||||||||||||| Sbjct 271 CGCGCTTGCTTGAATTTGTATTACTTATATTATCTCCAGTTTTACATTCAGAGCACTGGG 212 Query 512 CAGAAATCACATTGCGTCAACA 533 ||||||||| ||| ||||||| Sbjct 211 CAGAAATCAAGTTGTGTCAACA 190 >seq2809 Length=5502 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||| |||| | |||||| |||||||||| ||| | ||| ||| ||| |||| Sbjct 3007 GACAATGGGGAAGTCGTTACGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTC 2948 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||||||||||| ||||||||||| | |||| Sbjct 2947 GCTACCTTAGGACCGTCATAGTTACGGCCGCCGTTTACTGGGGCTT 2902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634369171232