Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq5840 212 1e-52 seq5550 212 1e-52 seq25966 206 6e-51 seq47862 201 2e-49 seq42319 178 3e-42 seq33506 176 1e-41 seq5841 176 1e-41 seq5849 159 7e-37 seq36788 96.9 7e-18 >seq5840 Length=1738 Score = 212 bits (234), Expect = 1e-52 Identities = 243/323 (75%), Gaps = 13/323 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| || ||||| || | || || | Sbjct 1552 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCAT--TAGCAAAC-T 1496 Query 61 GGA----AGGT-----TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111 | | || | ||| | || || ||||| ||||||||| ||| || ||||||| Sbjct 1495 GTATTAGAGCTCGCCGTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCAT 1437 Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||||| | ||||||| |||| || ||| |||||| |||| ||||| ||||||||| Sbjct 1436 CCTGCACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGC 1377 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 1376 CTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCA 1317 Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCC 291 ||| ||||| | || |||||||| ||||||| || |||| ||||| | |||| | Sbjct 1316 GCTACAGATCGTCGCCTTGGTGGGCCATTACCCCACCAACTAGCTAATCGTACGCGGACT 1257 Query 292 CATCGTACACCGATGAATCTTTA 314 |||| | |||| |||||||| Sbjct 1256 CATCTTTTGGCGATAAATCTTTA 1234 >seq5550 Length=2568 Score = 212 bits (234), Expect = 1e-52 Identities = 222/287 (77%), Gaps = 11/287 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA--AGCTCCCAC-- 56 ||||||||||||| ||||||||| ||||||||| | |||||| || ||| || | Sbjct 2054 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACCGTCATTAGC-CCGAGGT 2112 Query 57 ----ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 || || |||| |||||| | ||||| |||||||| ||| || ||||| || Sbjct 2113 ATTAACCCAGACCGTTTC-TTCCCTGACAAAAGCGGTTTACAACCCGAAGG-CCTTCTTC 2170 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 | ||||| | ||||||| ||||||| ||||||||| |||| ||||| |||||||||| Sbjct 2171 CCGCACGCGGCATGGCTGGATCAGACTTGCGTCCATTGTCCAAAATTCCCCACTGCTGCC 2230 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 2231 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 2290 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| |||| |||||||| ||||||| || |||||||||| Sbjct 2291 CTACAGATCGTTGGCTTGGTGGGCCTTTACCCCACCAACTACCTAAT 2337 >seq25966 Length=3938 Score = 206 bits (228), Expect = 6e-51 Identities = 220/289 (76%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| | |||||| || |||| || | Sbjct 717 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACTGTCA---TCCCCCA-GC 662 Query 61 GGAA----------GGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCA 110 || | || ||| ||||| | ||||| ||||||| ||| || ||||| Sbjct 661 GGTATTAACGCTAGGGATTTCCTCCCTGACAAAAGTCCTTTACAACCCGAAGG-CCTTCT 603 Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 || ||||| | ||||||| |||| || ||| |||||| |||| ||||| |||||||| Sbjct 602 TCAGACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTG 543 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| ||| |||||||||||| ||| ||||| ||| | |||||||||| | Sbjct 542 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCGGATCATCCTCTCAGACC 483 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||| ||||| | ||||||| ||| ||||| | ||||||| ||||| Sbjct 482 CGCTACTGATCGTCGCCTAGGTGAGCCTTTACCTCACCTACTAGCTAAT 434 >seq47862 Length=579 Score = 201 bits (222), Expect = 2e-49 Identities = 219/289 (76%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| | |||||| || |||| || | Sbjct 515 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACTGTCA---TCCCCCA-GC 460 Query 61 GGAA----------GGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCA 110 || | || ||| ||||| | ||||| ||||||| ||| || ||||| Sbjct 459 GGTATTAACGCTAGGGATTTCCTCCCTGACAAAAGTCCTTTACAACCCGAAGG-CCTTCT 401 Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 || ||||| | ||||||| |||| || ||| |||||| |||| ||||| |||||||| Sbjct 400 TCAGACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTG 341 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 340 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACC 281 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| |||| |||||||| ||||||| || |||||||||| Sbjct 280 AGCTACAGATCGTTGGCTTGGTGGGCCTTTACCCCACCAACTACCTAAT 232 >seq42319 Length=3671 Score = 178 bits (196), Expect = 3e-42 Identities = 225/313 (72%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| ||||| || Sbjct 448 GGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGTGGGTACCGTCA------------- 402 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | ||||| ||||||| || || |||||||| |||||| Sbjct 401 ------TTATCTTCCCCACTGAAAGAGCTTTACAACCCTAAGG-CCTTCATCGCTCACGC 349 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| | |||| || || |||||| | || ||||| |||||||||||||||||| Sbjct 348 GGCATGGCTAGATCAGGCTTGCGCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 289 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | | |||| || Sbjct 288 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 229 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| ||| |||| ||||||| || |||||||||| ||||| || ||| | Sbjct 228 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCCGATCCTTTG 169 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 168 CCGATAAATCTTT 156 >seq33506 Length=1068 Score = 176 bits (194), Expect = 1e-41 Identities = 180/234 (77%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||| ||||||| ||| || |||||||| |||||| | ||||||| |||| | Sbjct 955 AAAAGAGCTTTACAACCCGAAGG-CCTTCATCACTCACGCGGCATGGCTGGATCAGGGTT 897 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | |||||| |||||||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 896 GCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 837 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||||||| | ||| | ||||| | || |||| ||| || Sbjct 836 TCCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTAACGATCGTCGCCTTGGTGAGCCATT 777 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTTA 314 ||| | || |||| ||||| | |||| | |||| | |||| |||||||| Sbjct 776 ACCTCACCAACTAGCTAATCGTACGCGGACTCATCTTTTGGCGATAAATCTTTA 723 >seq5841 Length=1512 Score = 176 bits (194), Expect = 1e-41 Identities = 215/293 (73%), Gaps = 23/293 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| |||| ||| ||| Sbjct 1123 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCTGTCGGTAACGTCAAA-----ACA--- 1072 Query 61 GGAAGGTTTTA------TTCCCTTA--------TAAAAGAAGTTTACAATCCGTAGAACC 106 | ||||| ||| | ||||| | |||| ||||||||||| ||| || Sbjct 1071 GCAAGGTATTAACTTACTGCCCTTCCTCCCAACTTAAAGTGCTTTACAATCCGAAGA-CC 1013 Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||| || ||||| | ||||||| |||| || ||| |||||| |||||||||| |||| Sbjct 1012 TTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACT 953 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||||||||||||||| |||||||||||||||||||| ||||| || | |||||||| Sbjct 952 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCA 893 Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | ||| ||||| | || |||| ||| ||||| | || |||| ||||| Sbjct 892 AACCAGCTAGGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 840 >seq5849 Length=3646 Score = 159 bits (176), Expect = 7e-37 Identities = 156/200 (78%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 80 TAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||| ||||||| ||| || |||||||| |||||| | | ||||| |||| || Sbjct 2430 TAAAAGAGCTTTACAACCCGAAGG-CCTTCATCACTCACGCGGCGTCGCTGGATCAGGCT 2372 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 || |||||| ||||||| || |||||||||||||||||||||| |||||||| ||||| Sbjct 2371 TGCGCCCATTGTCCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCA 2312 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 |||||| ||||| || | |||||||||| | ||| ||||| | || ||| || | Sbjct 2311 GTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTTGCCTTGGTAAGCTTT 2252 Query 260 TACCCCGCCTACTACCTAAT 279 |||| | || |||| ||||| Sbjct 2251 TACCTCACCAACTAGCTAAT 2232 >seq36788 Length=1761 Score = 96.9 bits (106), Expect = 7e-18 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || || |||||||| |||||| | ||||||| |||| || Sbjct 1659 AAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 1717 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGT 184 || |||||| |||||||||| |||||||||||||||||||||| Sbjct 1718 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068256953408