Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq45868 452 1e-124 seq17552 307 3e-81 >seq45868 Length=1917 Score = 452 bits (500), Expect = 1e-124 Identities = 380/465 (82%), Gaps = 30/465 (6%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 107 TATTTCTTGTCACTACCTCCCCGAATCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 166 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 167 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTA 226 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||||||||| ||| || ||||||||||||| |||||||||||||| ||| Sbjct 227 CCCGTGACTGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTG 286 Query 223 AATGA---ACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA 279 ||||| |||| || | || ||| | | ||||||| ||||| |||||| Sbjct 287 AATGATTTACCA----CGTAT-----ACACGCGGTCAGCTAAGTTACTATGATTCACCAT 337 Query 280 GGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTT 339 | || || || ||||||||||| | || ||| ||| || | Sbjct 338 G------TGATGG---------TTAAATCTAATAAATGCTACCATTCTTGCGTCCGGTAT 382 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || ||||||||||||||||||||||||||||||||||||||| | | |||||||||| Sbjct 383 TTGCGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAAT-TTGCACTATCAAAT 441 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| ||||||| |||||||||||||||||||||||||||||| | | |||||||||| Sbjct 442 AAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTAT--ACTATTTATACTTAG 499 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 500 ACATGCATGGCTTAATCTTTAAGACAAGCATATGACTTCTGGCAG 544 >seq17552 Length=2126 Score = 307 bits (340), Expect = 3e-81 Identities = 366/487 (75%), Gaps = 32/487 (7%) Strand=Plus/Minus Query 39 TCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCC 98 ||| ||||| || |||||||||||| | || ||||||| |||||| ||||||||||||| Sbjct 1986 TCATTATTTCTT-TCACTACCTCCCTGAATCAGGATTGGATAATTTTCGCGCCTGCTGCC 1928 Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||| | || ||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 1927 TTCCGTAGAAGTGGTAGCCGTTTATCAGGCTCCCTCTCCGGAATCGAACCCTAATCCCCC 1868 Query 159 GTTA-CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG--GCAG 215 | || ||||| || ||||||| | ||| || |||||||| ||| |||| || |||| Sbjct 1867 GATAGCCCGTGAATGCCATGGTTGTCCAATACACTACCATC--AAGCTGATGGGAAGCAG 1810 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275 ||| | |||| || ||| || | || ||||| | |||||| |||||||| Sbjct 1809 AAACCTACATGATTTAT----TGCTAGAGTTCCAGCAATTCGATCAGTTATCATGAATCA 1754 Query 276 -CCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAG- 331 | || || || || | | ||| |||||||||| | | ||| ||| Sbjct 1753 TCTCAGTAGACCTTGCGGAATATTGGTTTAAATCTAATAAACGCTGGGGTCCCGTAAAGT 1694 Query 332 TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT----GTAGTAAG 387 || | | ||||||||||||||||||||||| |||||||||||| || |||| Sbjct 1693 TCCCCG--TAACGCATGTATTAGCTCTAGAATTACTACGGTTATCCATTTAACTAATAAG 1636 Query 388 ----------GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 | |||||||||||| ||||||| || ||||||||||| ||||||||| Sbjct 1635 AATATTAGCTTGAATATCAAATAAACTATAACTGTTTGAATGAGCCATTTGCAGTTTCA- 1577 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 |||| || ||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1576 -TTATAAATCCTTTATACTTAGACATGCATGGCTTAATCCTTGAGACAAGCGTATGACTA 1518 Query 498 CTGGCAG 504 ||||||| Sbjct 1517 CTGGCAG 1511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509632580864