Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7650 111 1e-19 seq146 109 4e-19 seq1807 96.9 3e-15 >seq7650 Length=7814 Score = 111 bits (122), Expect = 1e-19 Identities = 274/406 (67%), Gaps = 20/406 (5%) Strand=Plus/Plus Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784 |||| |||| ||||||| || || || |||||| |||| ||||||| | ||| || Sbjct 2631 TGCGCCAAAGTAAATGGCTTCAAATATATCTCGATTCAGTTGGAGTGCCTCTTTGCTGTC 2690 Query 65785 GTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGG 65843 | || ||| | ||| || | ||| || || ||||| ||||| || ||||| || || | Sbjct 2691 AAATGG-ATAGCGCATGAGAATAAACGTATCCGCCAGTCCTTGCACGCCAATGCCAATTG 2749 Query 65844 GACGATGACGCAAATTGGAACGTCTCGCCTCAGGT-ACAGGGTAGTAATTGATATCGATA 65902 |||| || || || || || ||| || | |||||||| ||||| | || || Sbjct 2750 GACGGTGTTTCACGTTCGAT-GTTTCGGCTTCTTTGACAGGGTAATAATTCACGTCAATC 2808 Query 65903 ATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG-CAA-TTGTTCGAAATCAA 65960 | ||||| || |||||| || | |||| ||| ||| || || ||||||| Sbjct 2809 ACTTTGTTCAAGTTCTTTGTCACAACTTTGGCGATT--TCGACAAGTTTTTTCAAATCAA 2866 Query 65961 AATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGA 66020 | | | || | | ||| ||||||||||||| | |||| || || | Sbjct 2867 AGTCT----------CGCGTCTTT-GGAT-CCACAAACTTGGGCAATGCAATCGACGCCA 2914 Query 66021 GGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTAC 66080 ||||| || || | ||||| |||| || ||||| |||||||| ||||||| ||| Sbjct 2915 AATTGCACACTGCCACTTCGTCCGGAGATGTGTACTCCACAATTTCCGTGCACAAATTCG 2974 Query 66081 TGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 | ||| ||||||||||||| ||| || ||||| |||||||| Sbjct 2975 ATGACTTTATTGTGCCCAAATTCTTTTGGTTGCTCTTTCGATTGCA 3020 >seq146 Length=10098 Score = 109 bits (120), Expect = 4e-19 Identities = 237/348 (68%), Gaps = 14/348 (4%) Strand=Plus/Plus Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | |||||| || ||||| || || | ||| |||| | |||| | |||||| Sbjct 9383 TTGTAAACCATGTAAGGGGTGCCAGTTTCGATTTGAGACTGTAAAATGGAGCTCCAAAGT 9442 Query 66194 GCGCGTGCCTTCAC---CGTACGTACC--GCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248 | | || ||||| | | || | | ||||| | ||| || | | | ||||| Sbjct 9443 TCTCTAGCTTTCACTTGCTTGCGAAACTTGCCCTTCTTTT-----CGAAGTTTATGTAGA 9497 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308 | | ||| || || ||||| ||||| | |||| | |||| | ||||||||||| Sbjct 9498 GCTCTTCAAATTCTTTGCCCCACACTTCAAATAGACCTTTGCACTCATTTGGACACATCA 9557 Query 66309 GCGACCA-ATCACCATC-CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||| ||| || || || ||| ||||| ||||||| | ||| || ||||| || | Sbjct 9558 AACTCCATATC-CCGTCACTTTTC-ACACGTTGCATAAACAAATCGGGGATCCACAGTCC 9615 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 || | ||| ||||||| | || || | ||||||||||| |||||||| | || Sbjct 9616 AAGAAACAAATCTCGTGCTCTCTCTTCTTCCGTTCCGTGATTTTTCCGCAAGTCCAAAAA 9675 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 ||||||||||| | |||||||| |||| || || || ||||| || Sbjct 9676 TTCAAAGATGTCAGAGTGCCATGGCTCCAAATAAATTGCAAACGATCC 9723 >seq1807 Length=15346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 216/318 (68%), Gaps = 21/318 (7%) Strand=Plus/Minus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || |||||||||||||| ||||| || || || ||||| |||||| ||| | | ||| Sbjct 8559 TCTGCCAGACCTTGAACACCAATGCCAATAGGGCGATGCTTCAAATTCGAAGTTTTTGCC 8500 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGC 65932 || | || || ||||| || || ||||| |||||||| || || || | | | Sbjct 8499 TCTTTCATTGGATAATAATTAATGTCAATAATTTTGTTCAAATTTCGGGTTACTATTTTC 8440 Query 65933 ACGATACGTCGC--AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 | || || |||| ||| |||||||| |||| | || | | || Sbjct 8439 --GTAACTTCTACTAATTTTTC-AAATCAAA-TGTTCGTGTCG--CAACATTG------- 8393 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||| ||||| | | | ||| || | || || ||||| || || || |||| | Sbjct 8392 --ACAAATTTGGGCAACGAGATAGAGGCCAAATTACATACAGCAATTTCATCTGGAGATG 8335 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTG 66108 | ||||| |||||||| ||||| | ||| || || | || || |||||||||||||| Sbjct 8334 TGTACTCCACAATTTCTGTGCATAAATT--TGAAGATTTAATTGTTCCCAAATTCTGTTG 8277 Query 66109 ATTACTCTTGCGATTGCA 66126 ||| || ||||||||||| Sbjct 8276 ATTGCTTTTGCGATTGCA 8259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397321812103760