Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq18604 147 7e-31 >seq18604 Length=3154 Score = 147 bits (162), Expect = 7e-31 Identities = 645/1001 (64%), Gaps = 40/1001 (4%) Strand=Plus/Plus Query 1949 TGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTG 2008 |||||| || ||||| || || ||||| || || |||||||| || || | | Sbjct 44 TGATCGAGCTGGACGGCACCGAAACCAAAGCCCGCCTGGGCGCCAACGCCATGCTGGCCG 103 Query 2009 TGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACC 2068 | || || ||||| || ||||| ||||| || || | | || || ||| |||||| Sbjct 104 TATCGATGGCTGTGGCCCGCGCCGCTGCCGAAGACGCCGGCCTGCCGCTGTACCGCTACC 163 Query 2069 TTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTT 2128 | || || | | | | | || || || ||||||||| | |||||||||||| Sbjct 164 TGGGTGGTGCCGGCCCGATGGCGCTGCCGGTACCGATGATGAACGTTATCAACGGTGGTG 223 Query 2129 CTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAA 2188 | ||| | || | | | |||| ||||| ||||| || || | || || | | Sbjct 224 CACACGCCAACAACACCCTTGACATCCAGGAATTCATGATCGTGCCGGTGGGCGCGGCTA 283 Query 2189 CATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTA 2248 | ||| ||||| || || || || || || |||||||||||||| |||||| | Sbjct 284 CCTTCCGCGAAGCCCTGCGCTGTGGCGCCGAGATCTTCCACGCGCTGAAGAAACTGTGCG 343 Query 2249 AAG--AACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGA 2306 | | || | || | || |||| ||||||||||| |||||||| || | || Sbjct 344 ACGGCAAAGGCTAC--GCCACCACCGTCGGTGACGAAGGCGGTTTCGCCCCGAACCT-GA 400 Query 2307 C--GGAACTGAAGATGGTGTTGAAACT-ATCATCAAAGCTATCGAAGCTGCTGGATATGT 2363 | | || ||||| | | || || || | |||| ||||| ||||| || || || Sbjct 401 CCAGCCAC-GAAGAAGCCATC-AAGCTGATTCTGGAAGCCATCGACGCTGCCGGTTACGT 458 Query 2364 ACCAGGTAAAGACGTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGA 2423 | || | ||||| | | | || ||||| || || || |||||| | | Sbjct 459 TGCCGGCCAGGACGTGATGCTGGCCCTGGACTGCGCTTCCAGCGAGTTCTACAAAG---- 514 Query 2424 ACGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTG-CTG 2482 ||| |||| || || || | | |||||| ||| || ||| || Sbjct 515 ACGGCAAGT-----ACCAC-CTGACC-----GCCGAAGGC----CTGG-CG--CTGACTT 556 Query 2483 CAGAACAAAT---CGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCG 2539 | || || | ||||||||| ||| ||| ||||| ||||| |||||| | |||| Sbjct 557 CCGAGCAGTTTGCCGACTACCTGGAAACCCTGGCCAACAACTACCCGATCATCTCCATCG 616 Query 2540 AAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTG 2599 ||||||| ||| |||| ||||||||| ||| |||||| || || || ||||| || | Sbjct 617 AAGATGGCATGAGCGAACACGACTGGGCCGGCTGGAAAGTGCTGACCGACCGTCTGGGCG 676 Query 2600 GTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAG 2659 | || |||| ||||||||| | ||||| || ||| | | ||| | |||| Sbjct 677 ACCGCATCCAGCTGGTAGGTGACGACCTGTTCGTGACCAACCCGTCCATCCTGGCCAAAG 736 Query 2660 GTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGA 2719 | || | || | || ||||| | || | ||||| ||||| ||||| || || Sbjct 737 GCATCGAAGGCGGCCTGGCCAACTCGCTGCTGGTAAAAGTGAACCAGATCGGCACCCTGT 796 Query 2720 CTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACA-CAGCAGTAGTATCA 2778 | ||||| | | || | || |||| || | | |||| |||| || | Sbjct 797 CCGAAACCCTGAAGGCGGTAGACCTGGCCAAGCGTTCGCGCTACACCAGC-GTGATGAGC 855 Query 2779 CACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAAC-GC 2837 |||||||| || ||||| ||||| || ||||| || | || || || || ||| || Sbjct 856 CACCGTTCCGGCGAAACCGAAGACAGCACCATCGCCGACCTGGCCGTAGCCACCAACTGC 915 Query 2838 TGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATT 2897 | || || ||||| || || |||| || | ||||| || || || ||||||||| | Sbjct 916 ATG-CAGATCAAGACCGGCTCGCTGTCGCGCTCCGACCGCATGGCCAAGTACAACCAACT 974 Query 2898 GCTTCGTATCGAAGACCAACTTGGTGAAGTTGCAGAATACC 2938 ||| ||||||||||| | || || || | ||| | |||| Sbjct 975 GCTGCGTATCGAAGAAGAGCTGGGCGATGCTGCCTACTACC 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155944253158596