Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq25966 93.3 6e-14 seq20132 93.3 6e-14 seq38752 86.0 9e-12 seq5550 86.0 9e-12 >seq25966 Length=3938 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||||||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 1988 GGGGGATTAGCTCAGTTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 2047 Query 142853 CCGTTATTCTCCACCAACCATTGC 142876 |||| || |||||||| ||| ||| Sbjct 2048 CCGTCATCCTCCACCACCCAATGC 2071 >seq20132 Length=1115 Score = 93.3 bits (102), Expect = 6e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||||||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 360 GGGGGATTAGCTCAGTTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 419 Query 142853 CCGTTATTCTCCACCAACCATTGC 142876 |||| || |||||||| ||| ||| Sbjct 420 CCGTCATCCTCCACCACCCAATGC 443 >seq38752 Length=1498 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 924 CGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGAT 865 Query 142852 TCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 864 CCCGTCATCCTCCACCA 848 >seq5550 Length=2568 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 763 CGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGAT 704 Query 142852 TCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 703 CCCGTCATCCTCCACCA 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691020045618840