Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq706 89.7 2e-15 >seq706 Length=19346 Score = 89.7 bits (98), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 38 ACGAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTA 96 |||||| ||||||||| ||| ||||| || |||||||||||||| ||| ||| ||| Sbjct 10479 ACGAGTACAGTTGTTTGATAATACAGCTGGAATATGGGAGGTAAATTCCTTTTAAGACTA 10538 Query 97 AATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||| || || |||||||| |||||||| | || ||| | ||||||||||| | Sbjct 10539 AATACACTACACGAAACCGATAGTTCACAAGTACCGCGAGGGAACGGTGAAAAGCACTCT 10598 Query 156 GGAAAGAGAGTTAAAA 171 | ||||| || |||| Sbjct 10599 GATAAGAGGGTGAAAA 10614 Score = 80.6 bits (88), Expect = 1e-12 Identities = 88/116 (76%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||| | |||| |||| | ||| || |||| || |||||||| || |||| Sbjct 11093 GACCCGAAAGGTTGTGATCTATACTTGACATGGTAGAAGTCAAAGGAAACTTTGATGGAA 11152 Query 630 G--CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| | |||| ||| |||||| |||| | |||| | ||| |||||||||||| Sbjct 11153 GACCTCCGAACGGTGCTGACGTGCAGATCGCTTGTCAGAGTTGAGTATAGGGGCGA 11208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079984684700