Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30 300 1e-76 seq53 84.2 2e-11 >seq30 Length=128594 Score = 300 bits (332), Expect = 1e-76 Identities = 801/1211 (66%), Gaps = 30/1211 (2%) Strand=Plus/Plus Query 65723 AGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTC 65782 || ||||| || || |||||| | || ||| || || || | | ||||| ||| | Sbjct 3035 AGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCGCCTGCGCCTCCTCGGAC 3094 Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 |||||||||| | ||| |||| | | ||||||||| || || || || | |||||| Sbjct 3095 TCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCTGGACACCGAGCCCGATG 3154 Query 65843 GGACGATGACGCAAATTGGAACGT-CTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 || || || |||| ||| ||| | |||||| || ||||| ||||| ||||| Sbjct 3155 GGGCGGTGGCGCATGTTGCT-CGTGCGCGCCTCCTTGACCGGGTACAGGTTGATGTCGAT 3213 Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCA 65959 | ||| || | ||||| || | || ||| | || || || | | ||| || Sbjct 3214 GACGCGGTTGAGGTTGCGCGTGGCGACTTGC--GTCACCTCAAACAGGCGCTGGAAGTCG 3271 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 |||| | || | || | | || || | || || | || ||| Sbjct 3272 -------TAGGT-GCCCGTGCGTTCGT----CGACGAAGCGGTTGAGCGCGATCGAGGCG 3319 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 |||||||| || || | |||||| || | || |||||||| || || |||||||| || Sbjct 3320 AGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGATCTCCGTGCACAGGTTC 3379 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 |||||| || ||||||| ||||| || || |||||| ||||| || |||||||| Sbjct 3380 GAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTAG 3439 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | ||||| || ||||| ||||| || | || | | ||| ||| || ||||| Sbjct 3440 AGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCACAGCGCGCGC 3499 Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAG 66259 ||||| | ||| | ||| | || | | ||||| || ||| || | |||||| Sbjct 3500 GCCTTGATCGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTCGAAG 3559 Query 66260 GATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA-ATC 66318 | ||||| |||| ||| | || || ||| || || | |||||||| | | Sbjct 3560 TCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCAGAGC 3619 Query 66319 ACCATCCTGTTCTACACGACGC---ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAG 66375 | || |||| |||| ||| || || || || | ||||||| ||||||| || Sbjct 3620 TCGTTC---TTCTCCACG-CGCTCCATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAAG 3675 Query 66376 ATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 ||||| || || |||||| |||||| || ||||||| ||| ||||| | ||| Sbjct 3676 GTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGGACATGAT 3735 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 |||||| ||||| || |||||||||| |||||| | |||| | || ||| ||||| || Sbjct 3736 GTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCTG 3795 Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555 |||||||||||| || |||||||| || |||| |||||| || || ||||| || | Sbjct 3796 GTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAGGT 3855 Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAAT 66615 ||| ||||||||| |||| ||| || || || | |||||||| || ||||| Sbjct 3856 GCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACCGCGAGGCCAAT 3915 Query 66616 ACCACCGGCCGTCTTCGAGATGGCAGCACAA-TCGGCCAC-TGTCCGGAATATGCCGTCA 66673 || |||||| ||||||||| || || || | |||| | | ||||| || Sbjct 3916 GCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTTAAGCGTGTC--GTAGATGCCCTCG 3973 Query 66674 ATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCG 66733 || ||||| |||| ||||| | |||| |||| || || || || || ||| || Sbjct 3974 ATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGTGCCG 4033 Query 66734 GCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTC 66793 || |||||| ||||| | ||||| || || | | | |||||| | ||||||| Sbjct 4034 GCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTGCGACATGAGGTCGTACGTC 4093 Query 66794 TCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTAT 66853 ||||| |||| | | ||| | | || || ||| || ||||| || | || Sbjct 4094 TCGATCGCAGCGGCCAGGTTGTTGAAGTGGATGCCGCAGGCGACGCGCATGAGCATGTGC 4153 Query 66854 TGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTG 66913 || || || ||||| | | | | | || | | | ||| ||||| || || |||||| Sbjct 4154 TGTGGGCGCTCGACGATCTGGCCGTGGAGCTTGAGCAGGTACGAGCGCTCGAGCGTCTTG 4213 Query 66914 ATACCAAAGTA 66924 | || ||||| Sbjct 4214 AAGCCGAAGTA 4224 >seq53 Length=108086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||||||| || | || |||||| |||||||| ||| | || || |||| Sbjct 12234 TGTTCCCCATCCAGCACAAGACGATTTGGGAGATGTACAAGAAGCATAAGGCGTCTTTCT 12293 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||| |||| | | ||| || |||||| || | ||| || Sbjct 12294 GGACTGCCGAGGAGATCGACCTCAGCGCCGACCCCAAGGACTGGAAGACCCTCTCGGCCG 12353 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || || || ||||| || | ||| | || ||||| ||||| || ||||| || || Sbjct 12354 GCGACCAGCACTTCATCAAGAACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATTGTGC 12413 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | || ||| | ||||||| || | | ||||| || || |||| Sbjct 12414 TTGAGAACCTCGCTGTCCGCTTCATGAAGGAGGTCCAGATCCCCGAGGCCCGCTGCTTCT 12473 Query 61304 ACGGCTTCCAG 61314 ||||||||||| Sbjct 12474 ACGGCTTCCAG 12484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564540412960