Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq93 116 2e-20 seq6 111 7e-19 seq449 86.0 3e-11 seq285 84.2 9e-11 >seq93 Length=81983 Score = 116 bits (128), Expect = 2e-20 Identities = 189/266 (71%), Gaps = 11/266 (4%) Strand=Plus/Plus Query 222432 CGGCGTGGCCTACCTCCACTCGCGCACCCCGTC---CATCATCCACCGCGACCTCAAGTC 222488 |||| || | ||| | |||||| || ||| | |||| | |||||||| ||||| || Sbjct 18202 CGGCATGACGTACTTGCACTCGGCCAAGCCGGCGCCCATCCTACACCGCGATCTCAAATC 18261 Query 222489 CAGCAACCTGCTCGTGGGCGACTCC--CTGTCGATG-AAGGTGGCCGACTTTGGGTTCGC 222545 |||| | || || |||| || ||| || | ||||| |||||||| || | | Sbjct 18262 GCTCAACATTCTGGT---CGACGCCAACTGGCGCGGCAAGGTCGCCGACTTCGGCATGAC 18318 Query 222546 GCGGATCAAGGAAACCAACGCCACCATGACACGGTGCGGCACGCCGTACTGGACGGCACC 222605 || ||| ||||| |||||||||||| | ||||||| | ||| |||| ||| || Sbjct 18319 ACGCATCCAGGAAGAGGGCGCCACCATGACGCAGTGCGGCTCCCCGCTTTGGATGGCGCC 18378 Query 222606 CGAGATCATCACCCAAGA-GCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGCATCA 222664 |||||| ||| | ||| | | |||| ||||||| |||||| ||||||||||||||| Sbjct 18379 CGAGATGATC-CGCAACACGGCCTACGACGAGAAGAGCGACGTGTACTCGTTCGGCATCT 18437 Query 222665 TCATGTGGGAGGTCATCACGGGCAAG 222690 | ||||||||| || | ||||| Sbjct 18438 GTCTCTGGGAGGTCTACATGCGCAAG 18463 Score = 100 bits (110), Expect = 1e-15 Identities = 173/245 (71%), Gaps = 16/245 (7%) Strand=Plus/Plus Query 122139 CGGCCATCGTGCACCGCGACATCAAGCC-CTCTAACCTGCTGGTGGACGTCAACGCCGAG 122197 || ||||| | |||||||| |||| | ||| ||| | ||||| |||| |||| Sbjct 18234 CGCCCATCCTACACCGCGATCTCAAATCGCTC-AACATTCTGGTCGACGCCAACT----- 18287 Query 122198 GGCCAGCGCACCATCAAGGTGGCCGACTTTGGCTTTGCCCACATCAAGGAGGAGAACGTC 122257 ||| ||| |||||| |||||||| ||| | | | |||| |||| ||| || | Sbjct 18288 GGC--GCGG-----CAAGGTCGCCGACTTCGGCATGACACGCATCCAGGAAGAGGGCGCC 18340 Query 122258 ACCATGACCCGCGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAACGAGAAG 122317 |||||||| | |||| | ||| ||||||||||||||||| || || ||| | Sbjct 18341 ACCATGACGCAGTGCGGCTCCCCGCTTTGGATGGCGCCCGAGATGATCCGCAACACGGCC 18400 Query 122318 CACGACGAGAAGGTGGACGTCTACTCGTTTGGCATC-GTCGCCTGGCAGATCGTCACCCG 122376 ||||||||||| ||||| |||||||| |||||| ||| |||| || || || || Sbjct 18401 TACGACGAGAAGAGCGACGTGTACTCGTTCGGCATCTGTC-TCTGGGAGGTCTACATGCG 18459 Query 122377 CAAGA 122381 ||||| Sbjct 18460 CAAGA 18464 >seq6 Length=165813 Score = 111 bits (122), Expect = 7e-19 Identities = 175/246 (71%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 222442 TACCTCCACTCG-CGCACCCCGTCCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCT 222500 ||||| |||||| || |||| || ||| | ||||| ||||||||| | ||||||||| Sbjct 139911 TACCTGCACTCGTCGAACCCGGTG-ATCTTGCACCGTGACCTCAAGAGCGACAACCTGCT 139969 Query 222501 CGTGGGCGACTCCCTGTCGATGAAGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAAC 222560 ||||| ||| | | || ||||| | |||||| || || |||| ||| | | Sbjct 139970 CGTGGCCGAGGACTGGCATATCAAGGTCGGCGACTTCGGTCTCACGCGTTTCATGTCCGC 140029 Query 222561 CAACGCCACCATGACACGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCA--CC 222618 || ||||||| | | ||| ||||| |||| ||||||||||||||||| Sbjct 140030 TAAGAAGGCCATGACGCAGGTCGGTACGCCCATGTGGATGGCACCCGAGATCATCATGGG 140089 Query 222619 CAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTC 222678 ||||| |||||||| ||||| || || ||| |||| ||||||||| | |||||| | Sbjct 140090 CAAGA--AGTACACCGAAAAGGCAGATGTATACGCGTTTGGCATCATCCTCTGGGAGCTG 140147 Query 222679 ATCACG 222684 ||||| Sbjct 140148 CTCACG 140153 >seq449 Length=32475 Score = 86.0 bits (94), Expect = 3e-11 Identities = 177/261 (68%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 21633 ACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTTTTGC 21692 || || |||||||| | || ||||||||||| | ||| |||||||| || Sbjct 16737 ACGCCGGTGGAGCCGAAGCCGCCCTCGCCGCGGACCGAGTCGTCGAGCTCGGCC------ 16790 Query 21693 GCCTGCTGCAAAACTGGGGTCGAGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCA 21752 |||| || | | | ||| | ||| ||||||||||| || || | ||| || || Sbjct 16791 GCCTCCTCGACCTCGGCCGTCTCGTAGCGCTCCAGGATGAGCTGCGCCACGCGGTCTCCC 16850 Query 21753 TGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTA 21812 | | | ||||| ||| | |||||||||| | ||| ||||| ||||| | Sbjct 16851 TCGGCCACGGCGAAGTCAACGTCGCTGAGGTTGAAGAGGATCACGCCGACGTTGCCGCGG 16910 Query 21813 TAAGAACTG-TCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGA 21871 || | ||| |||| ||| || ||||||||||||| | ||||||| | ||||| || || Sbjct 16911 TA-GTCCTGATCGATGACGCCCGCGCCGACGTCGATGCTGTTCTTCCACGCCAGCCCGGA 16969 Query 21872 TCTGGGAGCGACGCGGCCGTA 21892 | || || ||||| ||||| Sbjct 16970 GCGCGGCGCCACGCGCCCGTA 16990 >seq285 Length=65808 Score = 84.2 bits (92), Expect = 9e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGC 449064 |||||||||||||||| ||| |||||||| ||||| | ||||||||| ||| | Sbjct 32869 GGTCATGCGCGACGGGATGGCGTGCGGGTTGATGATCAGGTCGGGCGTGATGCCTTCGAT 32928 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 | |||| ||||||||||| || | | || ||| | ||||||||||||||||| Sbjct 32929 GGTGAACGGCATGTCCTCCTGGCGGTACGTCATACCGCAGGTACCCTTCTGGCCGTGGCG 32988 Query 449125 GCTGCAGAACTTGTC-CCCCTGCTCGGG 449151 | ||||||||| || ||| |||| Sbjct 32989 CGAGGCGAACTTGTCACCGATGCACGGG 33016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084719663387772