Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq38 82.4 4e-14 seq8 82.4 4e-14 seq43 80.6 1e-13 seq41 80.6 1e-13 seq37 80.6 1e-13 seq34 80.6 1e-13 seq30 80.6 1e-13 seq28 80.6 1e-13 seq23 80.6 1e-13 seq22 80.6 1e-13 seq18 80.6 1e-13 seq12 80.6 1e-13 seq5 80.6 1e-13 seq2 80.6 1e-13 >seq38 Length=739548 Score = 82.4 bits (90), Expect = 4e-14 Identities = 96/129 (74%), Gaps = 12/129 (9%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGA--GCGAGTCAAAATGATAACATC-- 56 ||||||||| ||||| |||| | ||||| |||| ||| || | |||||| | Sbjct 4819 GAACCCAAACGCTTTGGTTTCCCTAAAGGTCCCGATGGCGCCTCCACTTGATAAAAGTTT 4878 Query 57 -----GCCC---GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 |||| || |||| | |||||| ||||| |||||||||||||||||||||| || Sbjct 4879 GTGCTGCCCACCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAAT 4938 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 4939 CGTCTTCGA 4947 >seq8 Length=1951132 Score = 82.4 bits (90), Expect = 4e-14 Identities = 96/129 (74%), Gaps = 12/129 (9%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGA--GCGAGTCAAAATGATAACATC-- 56 ||||||||| ||||| |||| | ||||| |||| ||| || | |||||| | Sbjct 1916050 GAACCCAAACGCTTTGGTTTCCCTAAAGGTCCCGATGGCGCCTCCACTTGATAAAAGTTT 1915991 Query 57 -----GCCC---GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 |||| || |||| | |||||| ||||| |||||||||||||||||||||| || Sbjct 1915990 GTGCTGCCCACCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAAT 1915931 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 1915930 CGTCTTCGA 1915922 >seq43 Length=321062 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 4482 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 4540 >seq41 Length=387629 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 384088 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 384030 >seq37 Length=724622 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 2749 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 2807 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 719372 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 719314 >seq34 Length=738859 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 5611 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 5669 >seq30 Length=789273 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 4996 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 5054 >seq28 Length=911200 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 7800 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 7858 >seq23 Length=1191819 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 6230 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 6288 >seq22 Length=1285527 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1408 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 1466 >seq18 Length=1385450 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1384921 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 1384863 >seq12 Length=1669363 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 6900 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 6958 >seq5 Length=2236389 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 2235274 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 2235216 >seq2 Length=2479747 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| | |||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 2462281 CCGAGCCCTGGCCGGCATCGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 2462223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399598060