Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq28 417 3e-114 seq7 417 3e-114 seq8 405 2e-110 seq34 113 1e-22 seq23 113 1e-22 seq12 113 1e-22 >seq28 Length=911200 Score = 417 bits (462), Expect = 3e-114 Identities = 323/383 (84%), Gaps = 17/383 (4%) Strand=Plus/Plus Query 168 ACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG 227 ||||| ||| ||||| | |||| |||||||||| || |||||||||||||| || Sbjct 1996 ACCAGCCCCGTGTCATTCAATAAGCAAAAAAACGACCAGAGTAGTGGTATTTCAAGGCCG 2055 Query 228 CCG--------AAACG-------GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 | |||| |||||||| ||| |||||||||| ||| ||||||| Sbjct 2056 CAAGCACAAGTAAACCCACACCTGCTCCCACCTATGCTACACCTCTGGTGTCTTTTCACA 2115 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||| | |||||||||||||||||||||| |||||| ||| Sbjct 2116 CGGTCGGACTAGAGTCAAGCTCTAGCGGGTCTTCTTTCCCCGCTGATTGTGCCAAGTCCG 2175 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2176 TTCCCTTGGCTGCGGTTTCGCTAGAGCGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 2235 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 2236 TTCATGCGCGTCACCAGTTAAATGACGAGGCATTTGGCTACCTTAAGAAAGTCATAGTTA 2295 Query 453 CTCCCGCCGTTTA-CCCGCGCTTGG-TTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 || |||||||| | ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct 2296 CTTCCGCCGTTGATCCCGCGCTTGGCTTGAATTTCTTCACGTTGACATTCTGAGCACTGG 2355 Query 511 GCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| ||| Sbjct 2356 GCAGAAATCACATTGCGTCTACA 2378 Score = 131 bits (144), Expect = 5e-28 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| ||| |||||||| |||||| |||| | |||| ||||||||||||||| Sbjct 1745 CTTTTACTCCACATGAGATTTCCGTTCTCATTGAGCTCACCTTGGGACACCTGCGTTATC 1804 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| ||| | || ||| || Sbjct 1805 GTTTTACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACCTCGTCTTGAAAGCGGGTC 1864 Query 127 GG 128 || Sbjct 1865 GG 1866 >seq7 Length=2024178 Score = 417 bits (462), Expect = 3e-114 Identities = 323/383 (84%), Gaps = 17/383 (4%) Strand=Plus/Minus Query 168 ACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG 227 ||||| ||| ||||| | |||| |||||||||| || |||||||||||||| || Sbjct 2022037 ACCAGCCCCGTGTCATTCAATAAGCAAAAAAACGACCAGAGTAGTGGTATTTCAAGGCCG 2021978 Query 228 CCG--------AAACG-------GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 | |||| |||||||| ||| |||||||||| ||| ||||||| Sbjct 2021977 CAAGCACAAGTAAACCCACACCTGCTCCCACCTATGCTACACCTCTGGTGTCTTTTCACA 2021918 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||| | |||||||||||||||||||||| |||||| ||| Sbjct 2021917 CGGTCGGACTAGAGTCAAGCTCTAGCGGGTCTTCTTTCCCCGCTGATTGTGCCAAGTCCG 2021858 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2021857 TTCCCTTGGCTGCGGTTTCGCTAGAGCGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 2021798 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 2021797 TTCATGCGCGTCACCAGTTAAATGACGAGGCATTTGGCTACCTTAAGAAAGTCATAGTTA 2021738 Query 453 CTCCCGCCGTTTA-CCCGCGCTTGG-TTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 || |||||||| | ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct 2021737 CTTCCGCCGTTGATCCCGCGCTTGGCTTGAATTTCTTCACGTTGACATTCTGAGCACTGG 2021678 Query 511 GCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| ||| Sbjct 2021677 GCAGAAATCACATTGCGTCTACA 2021655 Score = 131 bits (144), Expect = 5e-28 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| ||| |||||||| |||||| |||| | |||| ||||||||||||||| Sbjct 2022288 CTTTTACTCCACATGAGATTTCCGTTCTCATTGAGCTCACCTTGGGACACCTGCGTTATC 2022229 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| ||| | || ||| || Sbjct 2022228 GTTTTACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACCTCGTCTTGAAAGCGGGTC 2022169 Query 127 GG 128 || Sbjct 2022168 GG 2022167 >seq8 Length=1951132 Score = 405 bits (448), Expect = 2e-110 Identities = 321/381 (84%), Gaps = 17/381 (4%) Strand=Plus/Minus Query 168 ACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG 227 ||||| ||| ||||| | |||| |||||||||| || |||||||||||||| || Sbjct 1921750 ACCAGCCCCGTGTCATTCAATAAGCAAAAAAACGACCAGAGTAGTGGTATTTCAAGGCCG 1921691 Query 228 C-----CGA---AACG-----GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAA 274 | | | || | |||||||| ||| ||||||||||| | | | ||| Sbjct 1921690 CAAGCACAATTTAATGCATTTGCTCCCACCTATGCTACACCTCTCTAACCCTAACACG-- 1921633 Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 |||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||| Sbjct 1921632 GTCGGACTAGAGTCAAGCTCTAGCGGGTCTTCTTTCCCCGCTGATTGTGCCAAGTCCGTT 1921573 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1921572 CCCTTGGCTGCGGTTTCGCTAGAGCGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 1921513 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 1921512 CATGCGCGTCACCAGTTAAATGACGAGGCATTTGGCTACCTTAAGAAAGTCATAGTTACT 1921453 Query 455 CCCGCCGTTTA-CCCGCGCTTGG-TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||| | ||||||||||| |||||||||||||| ||||||||| ||||||||||| Sbjct 1921452 TCCGCCGTTGATCCCGCGCTTGGCTTGAATTTCTTCACGTTGACATTCTGAGCACTGGGC 1921393 Query 513 AGAAATCACATTGCGTCAACA 533 ||||||||||||||||| ||| Sbjct 1921392 AGAAATCACATTGCGTCTACA 1921372 Score = 131 bits (144), Expect = 5e-28 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| ||| |||||||| |||||| |||| | |||| ||||||||||||||| Sbjct 1922002 CTTTTACTCCACATGAGATTTCCGTTCTCATTGAGCTCACCTTGGGACACCTGCGTTATC 1921943 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| ||| | || ||| || Sbjct 1921942 GTTTTACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACCTCGTCTTGAAAGCGGGTC 1921883 Query 127 GG 128 || Sbjct 1921882 GG 1921881 Score = 109 bits (120), Expect = 2e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 29 TGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCA 88 ||||||| |||| | |||| ||||||||||||||| |||| ||||||||||||||||| Sbjct 1950545 TGTTCTCATTGAGCTCACCTTGGGACACCTGCGTTATCGTTTTACAGATGTGCCGCCCCA 1950604 Query 89 GCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 ||||||||||||||||||| ||| | || ||| |||| Sbjct 1950605 GCCAAACTCCCCACCTGACCTCGTCTTGAAAGCGGGTCGG 1950644 >seq34 Length=738859 Score = 113 bits (124), Expect = 1e-22 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 452 ACTCCCGCCGTTTA-CCCGCGCTTGG-TTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||| |||||||| | ||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 131 ACTTCCGCCGTTGATCCCGCGCTTGGCTTGAATTTCTTCACGTTGACATTCTGAGCACTG 190 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| ||| Sbjct 191 GGCAGAAATCACATTGCGTCTACA 214 >seq23 Length=1191819 Score = 113 bits (124), Expect = 1e-22 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 452 ACTCCCGCCGTTTA-CCCGCGCTTGG-TTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||| |||||||| | ||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 701 ACTTCCGCCGTTGATCCCGCGCTTGGCTTGAATTTCTTCACGTTGACATTCTGAGCACTG 760 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| ||| Sbjct 761 GGCAGAAATCACATTGCGTCTACA 784 >seq12 Length=1669363 Score = 113 bits (124), Expect = 1e-22 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 452 ACTCCCGCCGTTTA-CCCGCGCTTGG-TTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||| |||||||| | ||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 1422 ACTTCCGCCGTTGATCCCGCGCTTGGCTTGAATTTCTTCACGTTGACATTCTGAGCACTG 1481 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| ||| Sbjct 1482 GGCAGAAATCACATTGCGTCTACA 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635197481792