Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8 223 3e-53 seq4 223 3e-53 >seq8 Length=1951132 Score = 223 bits (246), Expect = 3e-53 Identities = 556/827 (67%), Gaps = 23/827 (3%) Strand=Plus/Plus Query 61095 CATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGA 61154 ||||||||| ||||| | || ||||||||||| | ||||||||| || |||| || Sbjct 1783161 CATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTGTCGCGCGA 1783220 Query 61155 CATGAATGACTGG-GAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 | | | ||||| | | | | || | || || || || || || || || | | Sbjct 1783221 CCTCGACCACTGGCGCGGCCTCAAGGACACG-GAGCAGCACTTTATCAAGCACGTCCTCG 1783279 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGG 61273 | ||||| ||||| ||||| || || || ||||| | | || || ||| | | Sbjct 1783280 CCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTTCATGTGCG 1783339 Query 61274 AGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCC 61333 ||||||| || | |||||||| || |||||||||||||||||| || ||||| ||| Sbjct 1783340 AGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGAACATCC 1783399 Query 61334 ACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA-ACGTGAA 61392 |||| ||||||||| | |||||||| |||||||||| || | | ||| | | | Sbjct 1783400 ACTCTGAGATGTACTCGCTGCTCATCGACACGTACATCAACGACCCGCAGGAGAAGCACA 1783459 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 | | ||||| ||| | |||||| | || || || ||||| || || || |||||| | Sbjct 1783460 TG-CTCTTCAACGCCGTTGAGACGCTGCCCGCCGTCAAGCGCAAGGCCGAGTGGGCCATG 1783518 Query 61453 AATTGGATC-ACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 |||||| ||| |||| ||| | |||| || || | | || ||||| | Sbjct 1783519 CGCTGGATCGACC---ACAAGCGGGCCTCCTTTGCGGAGCGCGTCGTCGCCTTTGCCGCT 1783575 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 |||||||| | || ||||| || ||||| ||||| ||||| ||| | ||||| || || Sbjct 1783576 GTCGAGGGCATCTTCTTCAGCGGGTCGTTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGC 1783635 Query 61570 CTTATGCCCGGTCTGACCTTCAG--CAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 || |||||||| ||||| ||| ||| ||| | || |||||||||||| |||| | Sbjct 1783636 CTCATGCCCGGCCTGAC--GCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACT 1783693 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTAT-CTGGTGAATCGTCCGTCGGAGGAGCGT 61686 | || ||||| | | || | | || ||| || ||| | ||||||| Sbjct 1783694 GCGACTTTGCCTGCCTCATGTT----CTCCATGCTGCACAAGAAGCCGCCCAAGGAGCGC 1783749 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 || || || | || || || || || ||||| ||| |||| || || || Sbjct 1783750 GTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTTGACCGAGGCGCTG 1783809 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC-AGTATATTGAATTTGTTGC 61805 |||||||| ||| |||||||||| | || ||| ||| |||| ||||| ||||| | Sbjct 1783810 CCCGTCTCCCTCCTCGGCATGAACTCCACTCTCATG-CGCGAGTACATTGAGTTTGTCTC 1783868 Query 61806 CGACCGTCTGTTGGTC-GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864 |||||| || | ||| | | || || || || |||| || | | ||||| || Sbjct 1783869 CGACCGCCTCCTCGTCAGCCTCGGCTACGACAAGG-TCTACAACGCCACCAACCCCTTCC 1783927 Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 || ||||| | ||||| | || |||||||| || || || ||| Sbjct 1783928 CCTTTATGGAGAACATTTCCATCGAGGGCAAGACCAACTTCTTTGAG 1783974 >seq4 Length=2372320 Score = 223 bits (246), Expect = 3e-53 Identities = 460/678 (68%), Gaps = 10/678 (1%) Strand=Plus/Minus Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| || |||||||| | |||||| || ||||| ||||| |||| || | ||| Sbjct 2278750 TTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAATG 2278691 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240 || ||| || | |||| |||| | | | | ||||| || | | ||||| | Sbjct 2278690 GCAAACCAGAGCTTGGATGCCGACACCTT-CTTGCGGCCCTTGCCCTCGGCCTCGTACTT 2278632 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||||| ||| | || || || || || || || |||| || |||| ||| || Sbjct 2278631 CTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCGG 2278572 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||||| |||| ||| || | | || || || |||||| || || || | ||| Sbjct 2278571 GCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCCA 2278512 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 || ||| ||||||| ||||| || || |||||||||| ||| || || || || Sbjct 2278511 CAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAGCTC 2278452 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||| || ||||||||||| || ||||| || || ||||| | ||| || | ||| || Sbjct 2278451 GAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGGCCG 2278392 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| ||| || |||||||||||||| || |||||||| || |||| ||| || || Sbjct 2278391 CTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGGGCAC 2278332 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 ||||||||| || | ||| ||||||||| | ||| || || | || || || | ||| Sbjct 2278331 GAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGCGGATGTTGTG 2278272 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTC 66658 || | || ||||| || ||||| ||||| ||||| ||||| || | | || Sbjct 2278271 CACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACA--CGTCTTGAGCGTA 2278214 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| || ||| ||| |||| ||||| |||||| |||| || || || Sbjct 2278213 TCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTCAGCTGC 2278154 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC--GAG 66776 || |||| ||| | | ||| || || || | |||||||| || || | | | Sbjct 2278153 GGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAA--AAAGCCCTCGG 2278096 Query 66777 ACATGTAATTGTACGTCT 66794 ||||||| |||||||||| Sbjct 2278095 ACATGTAGTTGTACGTCT 2278078 Score = 143 bits (158), Expect = 2e-29 Identities = 352/529 (67%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437 || ||||||| ||||| || | ||| | | | |||||| || | || |||||| Sbjct 2279880 TCGGACCACAGACCCATCTCAACAAGGTCCTTGAGCAAGTGCTTGTTCACCACCTGGAAC 2279821 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 ||||| || || || || || ||||||||| |||| ||| |||| || || || Sbjct 2279820 TCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTCGTGTAGGGCTCAATCGACTCGTTG 2279761 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGC 65557 ||||| ||||| |||||||| || || || |||||||| || |||| || ||||| || Sbjct 2279760 TTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGGCGCAACCAGCAGCGAGTTGCGA 2279701 Query 65558 AATCCGTTCATTTCAATGTTGTGACGCAATTCG--TCCCAGTTCCACATCGGTTTATCGT 65615 | |||| | | | | | | ||| | || ||||| | ||||| ||| ||| Sbjct 2279700 ATGCCGTCCTTCTTCACGCGCT--CGCGAAGCGACTCCCAATCCCACA--GGTC---CGT 2279648 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGA 65675 | | || || |||||| || || || | || | || || || || | Sbjct 2279647 GGGCTTC-ACATCCCACATGTCAAACTGAAGAATGCCCTCAGAGGTGGGCGAGCCCTCAA 2279589 Query 65676 AACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAAT 65735 || | ||||| ||||| | |||| | | || ||||| ||| | | Sbjct 2279588 AAGTCTCGTATGGCCCCTCAACGGACGCAATCTCCGTGGAGGCTTCGAGGGCGCCGTGGT 2279529 Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATAC 65795 | |||||||||||||| || || | || |||||||| ||||| || | || | || Sbjct 2279528 AGATGGTCTCGAAAATCTTGCGGTTCACCTCGCGTGCCTCGTCGCTGTCAAAGGGAAGAC 2279469 Query 65796 CCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCA 65855 |||||||| ||| | |||||| || || || || ||||| || ||||| || || |||| Sbjct 2279468 GCATCAGGATAAACGCGTCGGCAAGGCCCTGCACGCCAATGCCAATGGGGCGGTGGCGCA 2279409 Query 65856 AATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAAT 65904 ||||| | |||||| || ||||||||||| ||||| |||||||| Sbjct 2279408 TGTTGGACTTGCGCGCCTCTGGGACAGGGTAGTAGTTGATGTCGATAAT 2279360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 |||||||| |||||||| || || | || || | | || ||||||||||| ||| Sbjct 2280441 TCGACCGTAAACTGGATGGCGTTGGTGGCGGCACGCGAGCGCAGGTAGTACATGCCCGTC 2280382 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || ||||| ||| || || || ||||| || | | || || | || || ||| Sbjct 2280381 TTAAGGCCCCGCTTCCACGCGTAAAAGTGCATGGACGTGAGCTTGCCAAAGTTGGGGTCG 2280322 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 | | |||| || |||||||| ||||| ||||| | || ||||| ||||||||| Sbjct 2280321 GAGATGTGCACGTTGAACGACTGGCTCTGGTCGATAAAGGCGCCGCGATCAGCAGCCATG 2280262 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGG 65302 ||||| | ||| || | |||||| || |||||||||||| Sbjct 2280261 TCAATCAGCGTACGCTGGGAGAGCTCCCACACCGTCTTGTACAGG 2280217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567253814560