Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq42574 268 1e-69 seq21507 116 6e-24 seq24882 102 1e-19 seq42002 96.9 6e-18 seq33892 86.0 1e-14 seq31772 73.4 6e-11 >seq42574 Length=6330 Score = 268 bits (296), Expect = 1e-69 Identities = 213/255 (84%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | ||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 4797 ACTCGTTGACTTCATCAGTGTAGCGCGCGTGCGACCCAGAACATCTAAGGGCATCGCAGA 4738 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||| |||||||||||| | || ||| | ||||| ||||||||| | |||| ||| Sbjct 4737 CCTGATATTGCCTCAAAATCCCCATGGGTT-AAGCCGGTAGTCCCTCAATGAAGTATGCC 4679 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || | | | | |||||||||||||||||||||||||||||| ||||||||| Sbjct 4678 GTAAATTGGAATTCACGATACTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 4619 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 4618 CCAGACAAATCACTCCACCAACCTAGAACGGCCATGCACCACCACCCATAGTATAAAGAA 4559 Query 242 AGAGCTATCAATCTG 256 ||||| |||||||| Sbjct 4558 CGAGCTCTCAATCTG 4544 >seq21507 Length=1174 Score = 116 bits (128), Expect = 6e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 18 Query 62 CCTGTTATTGCCTCAAA 78 ||||||||||||||||| Sbjct 17 CCTGTTATTGCCTCAAA 1 >seq24882 Length=1402 Score = 102 bits (112), Expect = 1e-19 Identities = 128/171 (75%), Gaps = 15/171 (9%) Strand=Plus/Minus Query 59 AGACCTG-TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGT-------CCCTCTA 110 || |||| |||||||||||||||||||| || | ||||| ||||| ||||||| Sbjct 612 AGGCCTGCTTATTGCCTCAAACTTCCATCGGTTT-AAGCCGATAGTGCCTCCTCCCTCTA 554 Query 111 AGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 || | ||| || || || || | |||||| | ||| || || ||||| Sbjct 553 AGTAATATGCCGTAAATT-TA--CGTTGTG---ATTTAGTTGAATAAAGTTTCACTCGTT 500 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 | |||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 499 AACGGAATTAACCAAACAAATCACTCCACCAACTATGAACGGCCATGCACC 449 >seq42002 Length=5659 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 154 TTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 ||||| ||||||||||| | |||||||| ||||||||| |||| |||||||||| || Sbjct 2153 TTAAGATCTCGTTCGTTTACAAAATTAACCCGACAAATCATTCCATCAACTAAGAAAGGA 2094 Query 214 CATGCACCACCACCCATAGAATCAAGAA 241 |||| |||| |||| |||||| |||||| Sbjct 2093 CATGTACCATCACCTATAGAAACAAGAA 2066 >seq33892 Length=2418 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA-CCTGTTATTGCCT 74 |||||||||| ||||| | ||||||||| ||||||||||||| |||| ||||||| Sbjct 790 TCAGTGTAGCACGCGTACACGGCAGAACATCGGAGGGCATCACAGACCCTGGGATTGCCT 849 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113 ||||| |||| || | ||||| ||| ||||||||||| Sbjct 850 CAAACGTCCACCGGGT-CAAGCCCATACTCCCTCTAAGA 887 >seq31772 Length=2095 Score = 73.4 bits (80), Expect = 6e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGG 88 |||||||| |||||||||||||||| |||||||||||||| || |||||| || Sbjct 1344 CCCAGAACGTCTAAGGGCATCACAGGCCTGTTATTGCCTCGAAGTTCCATCGG 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796456620285