Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq36682 89.7 3e-16 seq21507 75.2 7e-12 seq42574 71.6 8e-11 >seq36682 Length=3019 Score = 89.7 bits (98), Expect = 3e-16 Identities = 63/68 (93%), Gaps = 3/68 (4%) Strand=Plus/Minus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 3019 CTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT 2962 Query 113 ACAACGCA 120 ||||||| Sbjct 2961 -CAACGCA 2955 >seq21507 Length=1174 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 249 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 192 Query 122 GCT 124 ||| Sbjct 191 GCT 189 >seq42574 Length=6330 Score = 71.6 bits (78), Expect = 8e-11 Identities = 63/76 (83%), Gaps = 7/76 (9%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||||||||| ||||| || |||||| |||| |||||||||||||||| ||| Sbjct 4977 CTCACTAAGCCATT-----CGGTACTA-GCGACGAGCGGTGTGTACAAAGGGCAGGAACG 4924 Query 109 TAATACAACGCAAGCT 124 |||| |||| || ||| Sbjct 4923 TAAT-CAACACATGCT 4909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300674552300