Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2803 259 5e-67 seq9285 127 2e-27 seq30637 87.8 2e-15 seq44078 80.6 3e-13 seq4775 78.8 1e-12 >seq2803 Length=450 Score = 259 bits (286), Expect = 5e-67 Identities = 171/188 (91%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 155 GAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATAT 214 Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 215 ATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACC-AT 273 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 ||||||||| |||| ||| |||||||| |||||||||| |||||| |||||||||||| Sbjct 274 CGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAGTTGTCAGAGGTGAAATTCT 333 Query 182 TGGATTTA 189 |||||||| Sbjct 334 TGGATTTA 341 >seq9285 Length=617 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 198 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 257 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 258 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 315 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 316 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 375 Query 190 T 190 | Sbjct 376 T 376 >seq30637 Length=1952 Score = 87.8 bits (96), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| |||||||| || | |||||| | ||||||||||| || |||| Sbjct 1941 CATGGAATAATGGAATAGGATCA-CGATCTTATTTTTTTGGTTTCTAGGATCGAG-GTAA 1884 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| |||| ||||||| ||| | |||| ||| |||| ||||||||||||| ||| Sbjct 1883 TGATTAATAGGGATAGTTGGGAACT--AATATTTAATCGTCAGAGGTGAAATTCTTAGAT 1826 Query 187 TTAT 190 |||| Sbjct 1825 TTAT 1822 >seq44078 Length=9979 Score = 80.6 bits (88), Expect = 3e-13 Identities = 67/81 (83%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTC--AAAGCAGGCCTTTGCTCGAATACATTA 65 ||||||||||| ||| |||||||||| ||| ||||||||| |||||| ||||| | Sbjct 95 GGACTTTTACTGTGAGAAAATTAGAGTGTTTTTAAAGCAGGCGTTTGCTTGAATATTGCA 36 Query 66 CCATGGAATAATAGAATAGGA 86 ||||||||||| |||||||| Sbjct 35 GCATGGAATAATGGAATAGGA 15 >seq4775 Length=494 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCAT 69 ||||||||| || |||||||||| ||| ||||||||| |||||| ||||| | ||| Sbjct 76 ACTTTTACTGCGAGAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTTGAATATTGCAGCAT 17 Query 70 GGAATAATAGAATAGG 85 |||||||| ||||||| Sbjct 16 GGAATAATGGAATAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511779354400