Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spironucleus_20salmonicida_20[genbank_20GCA_5F000497125.1_202013-11- 19] 233 sequences; 12,954,588 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 268 3e-69 >seq1 Length=5841 Score = 268 bits (296), Expect = 3e-69 Identities = 225/273 (82%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 263 TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG---AT 319 || || ||||| ||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 4171 TCGTTCCACAACGTCTAACTAGAGTCAAGCTCAACAGGGTCTTCTTGCCCCGCTGGCCAT 4112 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA-GATAGTAGATAGGGACAGTGGGA 378 | | | |||||||||| | |||| ||||||| | ||| | | |||||||||| || Sbjct 4111 TACCACTCGCCCGTTCCCGAGTCTGTAGTTTCGCGAAGAT-GCATCTAGGGACAGTAAGA 4053 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 | ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| Sbjct 4052 ACCTCGTTAATCCATTCATGCACGTCCAAAATTACTGGACGAGGCATTTGGCTACCTTAA 3993 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||||||||| | ||||| | | |||| ||| ||||||| Sbjct 3992 AAGAGTCATAGTTACTCCCGCCGTTTACCAGAGCTTGAATAACTTTCATCATATTGACAT 3933 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || ||||||||||||||||||||| | ||||| Sbjct 3932 GCATAGCACTGGGCAGAAATCACATCGTGTCAA 3900 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| || |||| || || |||| | | ||||||| |||||||| Sbjct 4390 CTTTTACTCTACAACAGGTTTCCGTCCTGTTTGAGCTCACTTTAGGACGCCTGCGTTGCT 4331 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| ||| | |||||||||||||||||||||| | || |||| Sbjct 4330 TTTTAGCAGGCGCGCCGCCCCAGCCAAACTCCCCATCAAACGATGT 4285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635196189984