Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq123 1577 0.0 >seq123 Length=4981 Score = 1577 bits (1748), Expect = 0.0 Identities = 2302/3225 (71%), Gaps = 68/3225 (2%) Strand=Plus/Minus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 4096 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 4037 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 4036 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 3978 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 3977 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 3918 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 3917 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 3858 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 3857 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 3798 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 3797 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 3738 Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACT 880 |||||||||||||||||| | |||||||| || |||||||||||||||||||| ||| || Sbjct 3737 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCT 3678 Query 881 GCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCA 940 ||||| |||||| || |||| ||| |||||||||||||||||||||||||||| Sbjct 3677 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 3618 Query 941 GAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTT 1000 |||||||||||| | || ||||| |||||||| || ||||| ||||||| |||||| Sbjct 3617 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTT 3558 Query 1001 CCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAAT 1060 ||| ||| | ||||||| || ||| | |||||||| || || ||||| Sbjct 3557 CCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAT 3498 Query 1061 AGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAA 1120 ||||||||||| |||||||||||||||||| ||||||||||||||| || ||| | || Sbjct 3497 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 3438 Query 1121 GACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAA 1180 ||||| || || || |||| ||| | |||||||| || | || ||||| || |||||| Sbjct 3437 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAA 3378 Query 1181 GCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGAT 1240 |||||| ||||||||||| || ||||| || |||||||||||||||||||| |||||| Sbjct 3377 GCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGAT 3318 Query 1241 ATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAA 1300 || ||| | || | ||||| ||||| ||||||||||||||| ||||| |||||||| Sbjct 3317 ATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAG 3258 Query 1301 ATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAA 1360 | || | |||||||| |||||||||| ||||| ||||| ||||| |||||| Sbjct 3257 CTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAA 3198 Query 1361 CTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTAC 1420 || | ||||| | | ||||| |||| | | || |||| ||| | |||||||| Sbjct 3197 ATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTAC 3138 Query 1421 GACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCGAGG 1480 |||| ||| ||||||||| | || |||||||||||||| || | |||| | | || |||| Sbjct 3137 GACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGG 3078 Query 1481 CTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGAATCTGCTA 1540 |||| ||| |||| ||||||||||||| |||||||||||||||||| |||||||| Sbjct 3077 CTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTC 3018 Query 1541 AAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCT 1600 ||||| |||||| || || || || || | |||||||| ||||||||||||||| Sbjct 3017 AAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCT 2958 Query 1601 TCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCT 1660 || ||||| ||| |||||| | |||||||||||||||| | ||||| || ||| | Sbjct 2957 TCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGAT 2898 Query 1661 TCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAA 1720 ||||||||| || |||| ||||||||||||||||||||||||||||| |||||| Sbjct 2897 AAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAA 2838 Query 1721 TGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCC 1780 |||| |||||| | || ||| | |||||| ||||||||||| |||||||||| Sbjct 2837 TGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCC 2778 Query 1781 ATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATG 1839 |||| || |||| | ||| ||||||||||||| | || |||||||| | | |||||| Sbjct 2777 ATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATG 2719 Query 1840 TTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAA 1899 | || | || ||||||||||||| | || || |||||| || ||||||| | | Sbjct 2718 CTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGAT 2659 Query 1900 TCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACAAAC 1959 || | ||||||| | ||||| ||||| || |||| || ||| ||| Sbjct 2658 TCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTG--TTCAAC 2601 Query 1960 CAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAAC 2013 ||| | ||| || ||||| | | |||| || ||| | ||| || || || Sbjct 2600 CACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGAC 2544 Query 2014 TGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGA 2073 ||| | || ||||| || || ||||| || ||| | ||| | || || || || || || Sbjct 2543 CGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGA 2484 Query 2074 TTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG 2133 ||| || || | || | || || ||||||||||| ||||| || || ||||| || Sbjct 2483 TTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCG 2424 Query 2134 -TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTG 2192 ||| | ||||||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct 2423 CTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTG 2365 Query 2193 CTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCCAAA 2252 ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 2364 CTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAA 2305 Query 2253 CCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAAC 2312 | |||||||||||||||||||| ||||| ||||| |||||||| | ||||| || || | Sbjct 2304 CGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGC 2245 Query 2313 GCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAAACAAAG 2372 | || ||||||||| ||||| ||||||| || || | | ||| ||||| ||||||| | Sbjct 2244 GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTG 2185 Query 2373 ATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGGTGTCATGT 2432 | || | | |||| ||| |||| | ||| || | ||||| || |||| || |||| Sbjct 2184 ACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGT 2125 Query 2433 AAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT----ATGTAATGAAAAAATCA 2488 || | | | | || | || || | | || | | Sbjct 2124 AATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCG 2073 Query 2489 ATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCGGAACACAA 2548 | || | || ||||| ||| || || ||||| ||||||||||| || |||| Sbjct 2072 TTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAA 2013 Query 2549 TACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAATGTCTAAC 2608 | ||| || | ||| | ||| ||| || || |||||| || |||||||| Sbjct 2012 TTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGGATA-AATTATGTCTAAT 1962 Query 2609 GTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGT 2668 ||||||| || || ||| | || |||||| | || || |||| ||| |||||| Sbjct 1961 ATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGT 1902 Query 2669 AAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAG 2728 | ||||| || || | || || || || || | | ||||| ||||| |||||| Sbjct 1901 CAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAG 1842 Query 2729 TGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCA 2788 || ||||||||| | ||||| || || | ||||||||||| ||| ||||||| Sbjct 1841 ATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCT 1782 Query 2789 CGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATT 2848 || || || ||| |||| ||| |||| || ||||| | || ||| | ||||||||| Sbjct 1781 ACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT 1722 Query 2849 AACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCTCCTCTGGT 2908 || || ||||||||||| ||||||||| | ||||| || |||||| | | ||||| Sbjct 1721 AAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACACTACTGGT 1665 Query 2909 T---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAA 2965 | ||| ||| |||| ||| || || ||| || |||| |||| | ||||| Sbjct 1664 TATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAG 1605 Query 2966 TTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGGTCTGAT 3025 || |||||| ||| ||||||| ||||| ||||| || ||| |||| || ||| Sbjct 1604 CATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTG----GAT 1549 Query 3026 GACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TGAGGATTATAAATGGGG 3078 | || | | ||| ||||||| | ||| || | || || ||| | | || Sbjct 1548 GCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCGTTATGG 1492 Query 3079 CGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATACTCGTAC 3138 | ||| | | || ||| || |||||||| || ||||| || || ||| Sbjct 1491 TTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCT 1432 Query 3139 ATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGCCGCATA 3198 ||| | ||||| ||| ||| | |||||||||||||||| || ||||| || || Sbjct 1431 TTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 1372 Query 3199 CGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGACATTAT 3258 ||||| || ||||| || || |||||||||||||||||| ||||||| ||| |||| Sbjct 1371 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 1312 Query 3259 GAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCTCATGCG 3318 || || ||| | || || ||||| | |||||| |||||| | || ||||||| Sbjct 1311 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 1252 Query 3319 CTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCTCTCGGTCA 3378 |||| | | ||||||||||||||||| || || || ||||||||| | || | || || Sbjct 1251 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 1192 Query 3379 ATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTTCCTGA 3438 || |||||||| ||||| ||||||| || || || || || |||| ||||||||| Sbjct 1191 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 1132 Query 3439 GCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAATGGAA 3496 |||| || || | ||||| ||| || ||| |||||||||||| | ||| || Sbjct 1131 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAG 1074 Query 3497 ATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACCCTGCA 3556 || || || ||| | ||||| || |||||||||||||||||| | ||||||| Sbjct 1073 ATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTT 1014 Query 3557 CTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCA 3613 || ||||| ||| |||| || |||||| | || | || || | |||| || | | Sbjct 1013 TTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGA 955 Query 3614 CCCGATTCTGCTAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 || ||| || || || || |||||||| || ||||||||| Sbjct 954 TTCG--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 912 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 4880 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 4821 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 4820 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 4761 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 4760 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 4701 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 4700 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 4648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17734300299420