Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq123 951 0.0 >seq123 Length=4981 Score = 951 bits (1054), Expect = 0.0 Identities = 1325/1847 (72%), Gaps = 70/1847 (4%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 2518 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 2459 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 2458 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 2399 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 2398 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2339 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 2338 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 2279 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 2278 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 2219 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 2218 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 2159 Query 2919 GCTCGTCAGAAATTACGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT-- 2970 | ||||| |||||||| ||| | || ||| |||| | | | ||||| |||| Sbjct 2158 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 2101 Query 2971 ---CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGC 2996 || || || | |||||| ||||||| || Sbjct 2100 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 2041 Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTA 3052 ||| || ||||||||||| ||| || |||||||| ||| |||||| ||| ||| Sbjct 2040 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 1981 Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112 ||||| | | ||||||||| | |||||| || || ||| |||||| || || Sbjct 1980 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 1921 Query 3113 TCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169 ||||| ||| ||| ||| | || ||||||||| | | || ||||| ||||| || Sbjct 1920 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 1864 Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229 |||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| |||| Sbjct 1863 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 1804 Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289 |||||| | || ||||| |||| || ||| |||| ||||| ||| | || |||||||| Sbjct 1803 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 1744 Query 3290 TGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCC 3349 ||||||||||| ||||||||| | || ||| ||||||||| |||| | || || || Sbjct 1743 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 1684 Query 3350 TTCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAA 3409 | |||| |||||| ||| || |||| | || | |||| || ||| ||| | Sbjct 1683 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 1624 Query 3410 GAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTT 3469 | ||| || |||||| |||| |||| |||| ||||||| ||||| |||||||| Sbjct 1623 TACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTT 1564 Query 3470 CCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATG 3528 ||||||||||||||||| ||||| || ||||| ||| | |||| ||| |||| Sbjct 1563 TAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATG 1505 Query 3529 ATTCTCGTTATGGATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTC 3588 || |||||||||| |||||||| |||||||| |||| |||||| ||||||| ||||||| Sbjct 1504 ATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTC 1445 Query 3589 CGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTT 3648 | || ||| |||| || |||||| | | | || || ||||| ||||||||| Sbjct 1444 CTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTC 1385 Query 3649 TGCAGGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTT 3708 |||| || |||||||| | | || ||||| || || ||| ||| || |||||||||| Sbjct 1384 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTT 1325 Query 3709 ACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGT 3768 ||| ||||||||| || ||||| ||| |||||| ||||| || || ||||| || | Sbjct 1324 ACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTT 1265 Query 3769 TGCTTGTTATGCATACCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAAT 3828 | ||||| |||| | || | ||||| || || || || ||||| || || |||||| Sbjct 1264 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAA 1205 Query 3829 CTTCCCTTGGACAGTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGAT 3888 | || | || |||||||| || || ||||||||||| | |||||| || |||||||| | Sbjct 1204 CGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTT 1145 Query 3889 TCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCA 3948 |||| || ||||||||||| ||| | ||| | ||| ||||| || ||||||| Sbjct 1144 TCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTG 1085 Query 3949 GTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTG 4008 || ||| ||| || ||| | | | ||||||||||||||| |||||| Sbjct 1084 CGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTG 1025 Query 4009 GTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCC 4068 | ||||| | |||| ||| || |||||||||||||| |||||| |||| |||||| Sbjct 1024 GCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCC 965 Query 4069 GTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATC 4128 || |||| || | ||| ||||| |||| ||| | ||||||||| | | Sbjct 964 GTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGC 905 Query 4129 CGGATTATGTTAACTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCG 4187 | |||||| || | ||||| | ||||| || ||||| ||| || | || || Sbjct 904 CTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCG 846 Query 4188 CCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTAT 4247 | || ||||||| | |||| || | || ||| ||| |||| ||| Sbjct 845 C---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTAT 798 Query 4248 AATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTT 4307 | ||||||||||| |||||| | |||||||||| ||||| | | |||||| Sbjct 797 GACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTG 738 Query 4308 AATGTTTATCGCCATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 | ||||||||| || | || || ||| ||||| || ||||| || Sbjct 737 ACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 691 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 3794 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3735 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 3734 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3675 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3674 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3615 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 3614 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3557 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 3556 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3498 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 3497 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 3440 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 3439 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19369487995288