Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq123 1710 0.0 >seq123 Length=4981 Score = 1710 bits (1896), Expect = 0.0 Identities = 2346/3246 (72%), Gaps = 104/3246 (3%) Strand=Plus/Minus Query 653 AAGGGTATTAAGGATGAATGCTCGAAAATCCTTGAGGAATCCACCATGAAATCACGTAGA 712 || |||||||||||||| || || | | | || |||| ||||| |||||||| |||||| Sbjct 3905 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 3846 Query 713 GGCTTTACCGTACAAAGACTAATGAATGCTATGCGCACTGCCCACACTGAGGGCTGGTAC 772 |||||| | | || | | |||||||| ||||| || || |||| || |||| Sbjct 3845 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 3786 Query 773 GTTGTATTCGATACTCTTACTCTCGCCGATGACCGCCTTAAGGATTTCTATGATAATCCC 832 | || || || ||||| || | || || ||||| | ||| || |||||||||||| Sbjct 3785 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCC 3726 Query 833 AATGCTCTCCGTGACTATTTCCGTGATATTGGTCGTATGGTTCTCACTGCCGAGGGTCGT 892 |||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 3725 AATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGC 3666 Query 893 TCTGTCCATGATTCATCTTCGGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGCACC 952 | |||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct 3665 AAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTAC- 3607 Query 953 CAGC--ACGGCCGTTTACATTTTCACGCAGTGCACCTTATGCGCACACTTCCTCTGGGTT 1010 ||| | |||||| | ||||| || || |||||| ||||||| ||||||||| ||| Sbjct 3606 -AGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTA 3548 Query 1011 CTATCGACCCTAACTTTGGCAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAA 1070 | |||||||| ||||| | ||| || | | || || ||||||||||||||| Sbjct 3547 GCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAA 3488 Query 1071 ATACATGGCCCTATGGTTACTCTATGCCCATCGCGGTCCGGTACTCCCAAGACGCATTTT 1130 |||| ||||| ||||||||| |||||||||||| || || ||| | || ||||| |||| Sbjct 3487 ATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTT 3428 Query 1131 CGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTTAAAGCTACCTCGT 1190 | || |||| ||| | ||||| |||||| | || || || || |||||||||||| | Sbjct 3427 CACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTT 3368 Query 1191 ATATGGCTGTCGGCTTCTACGTCGCTAAATACGTTAACAAAAAATCAGATATTGACATGG 1250 |||||||||| || ||||| || |||||||||||||||||||| |||||||| ||| | | Sbjct 3367 ATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTG 3308 Query 1251 CCTCTAAAGGTCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTGC 1310 | ||||||||||||| ||||||||||||||| ||||| |||||||| | || | Sbjct 3307 CTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTAC 3248 Query 1311 TGCCCAAGAAAATTTTTCGCATCAGGATGTCTCGCAACTTCGGAATGAAGCTGCACACAA 1370 | |||||||| | || | ||||| ||| ||||||||||| ||||| ||| ||||| Sbjct 3247 TTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAA 3188 Query 1371 TGAGTCACCTCTCAGCGGAAACTCTAATCCAACTGACCCAAGTGGGCTACGACGTGACCC 1430 ||| | || || |||| |||||||||| ||| | |||| ||||||| ||| | Sbjct 3187 TGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGC 3128 Query 1431 CGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGA 1490 |||||||| | || |||||||||||||| || | |||| | |||||||||||| ||| Sbjct 3127 CGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAG 3068 Query 1491 AATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGC 1550 |||| ||||||||||||| |||||||||||||||||| |||||||| ||||| |||| Sbjct 3067 TTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGC 3008 Query 1551 GCAATTTGACCCGTCAA----ATCGGAGTGTCCAACCTGCAGAGTTTTATCGCTTCAATG 1606 || || || | || || || || |||||||||||||||||||||||||| ||| Sbjct 3007 GCGCTTCGA----TAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATG 2952 Query 1607 ACAACGAAATTAACAAGTATGGATATTTCTGATGAAACCAAAAACTACGTTGATACTGCA 1666 || ||| |||||| | ||||||||||||||| | ||||| || |||||| ||| Sbjct 2951 ACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCA 2892 Query 1667 GGAATTACTGCTACTCACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGA 1726 ||||||||| || || ||||||||||||||||||||||||||||| ||||||||| | Sbjct 2891 GGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAA 2832 Query 1727 AATTCAATCTGAACTTAAAAAATTCGAGAAGCTCTTACTTCGCCACCTTTCGCCATCACC 1786 ||||| | || ||| | ||||||||||||||||| || |||||||||||||| | Sbjct 2831 AATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAAC 2772 Query 1787 TGAACG-TACTGGCAAAGACTGACGCTCTCGACGAGGAAAAATACCTAAATATGCTAGGT 1845 | |||| | ||| |||| |||||||| | || ||||| || | || |||||||| || Sbjct 2771 T-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGC 2713 Query 1846 GCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACATGGTAAACAATCAATG 1905 | || ||||||||||||| | || || |||||| || ||||||| | | || | Sbjct 2712 ACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTT 2653 Query 1906 CTTGACTTATTAAATGAACGTGGACTATTATC-----CACA---TCAACAACCAACCCAA 1957 ||||| | ||||| || |||||| || |||| | | | |||||| | || Sbjct 2652 GTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCA--CTAA 2595 Query 1958 AAGGAAATACAAAATGA---ACTCTAACGAATCTGCTGTTGCCTTCGCTACTGCTCTCGC 2014 ||| || | | |||| | || ||| | || ||| || ||| | || Sbjct 2594 TAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGC 2535 Query 2015 ATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAGACGACTTCGATTT 2074 ||||| ||||||||||||||||| | || |||| | |||||||| || |||||||| Sbjct 2534 CTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTT 2475 Query 2075 CTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTCGCCGCGCTATTGA 2134 | || || || || |||||||| ||||||||||| |||||||| ||| |||| Sbjct 2474 TCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGA 2415 Query 2135 GGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTCCTGCTCCTGTTGA 2194 ||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 2414 GGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGA 2355 Query 2195 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCCAGACAGCATGTCT 2254 ||||||||||||||||||||||||||||||||||||||| ||||| || || || ||||| Sbjct 2354 GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCT 2295 Query 2255 TATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGACCAGCCAGTTAA 2314 || ||||||||||| || || || ||||| ||||| ||||| | || | || ||||| Sbjct 2294 CATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAA 2235 Query 2315 GGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACTGACCATGTTAC 2374 ||||||||| | ||||| |||||| ||||||||||||| |||||||||||| | |||| Sbjct 2234 AGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTAC 2175 Query 2375 ACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATGTAATGGCTAAA 2434 | |||||| ||||| ||| || |||||||||| ||||||| |||||||| ||||| Sbjct 2174 TGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAA 2115 Query 2435 ---------------GGCTCTCG---TCGGCGTTC---GCCGTCCCG-----CT------ 2462 ||| |||| | | ||| | ||||| || || Sbjct 2114 GGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGC 2055 Query 2463 ----CTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTTCTAGGGGC 2518 |||||| ||||| || |||||||| || || |||||| ||| || |||||| Sbjct 2054 AAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA--TTGCAGGGGC 1997 Query 2519 TTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGACCGCATT 2578 |||||||||| || || |||||| | |||||||| |||||||| ||| || || || Sbjct 1996 TTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATG 1938 Query 2579 CCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAACTATC 2638 || | |||||||| || || | |||| |||||| | || || ||| | | || || Sbjct 1937 CCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATT 1878 Query 2639 TCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTATTCGC 2698 || ||||| ||| ||||||||||||| || || | || || |||||| | || Sbjct 1877 TCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGT 1818 Query 2699 CTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTTCTAT 2758 ||||||||| | ||||| |||||||| | |||||| || || || || |||| ||| Sbjct 1817 CTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTAT 1758 Query 2759 ATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAGCTGGCGTTAAT 2818 | || |||||||| | |||||| || | | ||| | |||||||| | ||| |||||| Sbjct 1757 GTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAAT 1698 Query 2819 GCCACTCCTCTCGCACCTGTT---ACTACTGCCTCTGGCTGGGATGCTTCTGCCTATCTT 2875 |||||||||||| | ||||| ||||||| | | || | | || | |||| Sbjct 1697 GCCACTCCTCTCCCGACTGTTAACACTACTGGTTAT---ATTGACCATGCCGCTTTTCTT 1641 Query 2876 GGCACTATTCCATCCTCAAACC-TCAAGGTTCCTAAATTCTTACATCAAGGATACCTTAA 2934 ||||| ||| | ||| | ||| || | ||||| || ||| || || | || Sbjct 1640 GGCACGATT-AACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAA 1582 Query 2935 TATTTACAACAACTACTTTAAGCCACCGTGGGATG-CTGACCTTACATACGCTAACCCAT 2993 ||| || |||||||| ||||| | |||| ||||| |||||| ||| | ||||||| Sbjct 1581 TATCTATAACAACTATTTTAAAGCGCCGT-GGATGCCTGACCGTACCGAGGCTAACC--- 1526 Query 2994 CTAACATGCCTGAACAGGATTA---TAAATGGGGCGTTCG-TGTCGCTAACTTAAAATCT 3049 |||| || | | || ||| | | | || | || || || | || |||| | Sbjct 1525 CTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC- 1467 Query 3050 ATCTGGACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGACCACTGGCGCT 3109 || ||||| || || | |||||| | || | || ||||| ||| | Sbjct 1466 ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC 1407 Query 3110 ACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAA 3169 || |||||||| |||||||| |||||||||||||||||||| ||||| || | |||||| Sbjct 1406 ACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAA 1347 Query 3170 CGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACCTCC 3229 ||||| ||||||||| || || | ||| |||| || |||||| | ||||| Sbjct 1346 CGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCT 1287 Query 3230 TATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTAT 3289 ||||||| ||| ||||||||| | || | ||||||||| | | ||||| ||||||||| Sbjct 1286 TATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTAT 1227 Query 3290 GACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAAACA 3349 || || || || ||||||||| | || ||||| ||||| || ||||| || ||||| || Sbjct 1226 GATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACC 1167 Query 3350 TTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTATGACTCTCGCC 3409 | || || || || || |||| ||| ||||| || ||| || | ||||| || Sbjct 1166 TATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCG 1107 Query 3410 GTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGTCGGTAAAGAAT 3467 || ||| || || |||||| | ||| ||||| || || ||| || ||||| Sbjct 1106 CTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTG 1049 Query 3468 CTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACCTGCCTCCGCGC 3526 |||| || |||||||| | || ||||||||| | | |||||| ||| |||| ||||| Sbjct 1048 CTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGT 990 Query 3527 GAAGTATCCCTTAAGGAATTCTTCCACTCCTCGCCGGACTCCGCT---AAGTTCAAAATT 3583 ||| | || | ||||| | |||| | || | || || || ||||| || ||| Sbjct 989 GAAATTTCTATGAAGGATGTTTTCC-GTTCTGG--TGATTCGTCTAAGAAGTTTAAGATT 933 Query 3584 GCCGAGGGCCAATGGTATCG-CACGCAGCCT--GACCGCGTCGCATTCCCTTATAACGCA 3640 || ||||| || |||||||| | || |||| | | || | | ||||| || Sbjct 932 GCTGAGGGTCAGTGGTATCGTTATGC-GCCTTCGTATGTTTCTCCT--GCTTATCACCTT 876 Query 3641 CTTGACGGCTTTCCTTTCTACTC-TGCTCTGCCGTCTACTGACTTAAAACAACGTGTCCT 3699 ||||| ||||| || ||| | || | | ||| ||| ||| || || |||| || || Sbjct 875 CTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACT 817 Query 3700 AGTTAACACTGATAACTACGACGAAATCTTTCAGTCTATGCAACTCGCACACTGGAATAT 3759 || | || | || ||| | || ||||| | || | || ||||||| Sbjct 816 TATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAG 757 Query 3760 GCAAACTAAATTTAATACTACCGTCTATAGACATATGCCTACGACTCGTGATTCAATCAT 3819 || |||||||||| ||||| ||| | || |||| || ||||| ||||||||||| Sbjct 756 TCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCAT 697 Query 3820 GACGTC 3825 ||| || Sbjct 696 GACTTC 691 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 4877 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 4818 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 4817 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 4758 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 4757 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 4698 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 4697 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 4648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17443101936510