Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq81 949 0.0 >seq81 Length=7067 Score = 949 bits (1052), Expect = 0.0 Identities = 1330/1857 (72%), Gaps = 73/1857 (4%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 1198 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1257 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 1258 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1317 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 1318 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1377 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 1378 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1437 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 1438 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 1497 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 1498 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 1557 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970 | | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| |||| Sbjct 1558 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 1616 Query 2971 ----CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTG 2995 || || || | |||||| ||||||| | Sbjct 1617 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 1676 Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TT 3053 | || |||||||||||||| ||| || |||||||| | |||||| | | || Sbjct 1677 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 1736 Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112 |||| |||||| |||||||| | |||||| ||| || ||| ||||||||| Sbjct 1737 GAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 1794 Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170 ||||||| ||| | ||| | || |||||||||| | | || ||||| ||||| Sbjct 1795 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 1852 Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTG 3230 ||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||||| || Sbjct 1853 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTG 1912 Query 3231 CGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGC 3290 |||||||| | ||||||||||||| || || |||| ||||| ||| | || ||||| Sbjct 1913 CGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGT 1972 Query 3291 CATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTC 3350 || ||||||||||| ||||||||| | || ||| ||||||||| ||||| | || ||| Sbjct 1973 CACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTC 2032 Query 3351 CCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCT 3410 || | |||| |||||| ||| || | || | || | |||| || ||| ||| Sbjct 2033 CCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 2092 Query 3411 AAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTAT 3470 | | ||| || |||||| |||| |||| |||| ||||||| ||||| |||||| Sbjct 2093 GATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTAT 2152 Query 3471 TTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCG 3526 || ||||||||||||||||| ||||| || ||||| ||| ||| ||| | | Sbjct 2153 TTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCA 2208 Query 3527 TGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCT 3586 |||||| |||| ||||| ||||||||||||||||| |||| |||||| ||||||| || Sbjct 2209 AGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCT 2268 Query 3587 TCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTAT 3646 |||||| || ||| |||| || |||||| | | | || || ||||| ||||| Sbjct 2269 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTAT 2328 Query 3647 GGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCA 3706 |||| |||| || |||||||| | | |||||||| || || ||| ||| |||||||| Sbjct 2329 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCA 2388 Query 3707 GCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCG 3766 |||||| | ||||||||| || ||||| ||| |||||| ||||| || || ||||| Sbjct 2389 GCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCG 2448 Query 3767 ACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGA 3826 || || ||||| |||| | | || ||||||| || || || || ||||| || || || Sbjct 2449 TCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGA 2508 Query 3827 CCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCC 3886 |||| | || | || |||||||| ||||| || |||||||| | |||||| || ||||| Sbjct 2509 CCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCC 2568 Query 3887 TCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCC 3946 || ||||| || || |||||||| ||| | ||| | ||| ||||| || ||||| Sbjct 2569 GCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCC 2628 Query 3947 TATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCT 4006 || || ||| ||| || ||| | | | ||||||||||||||| | Sbjct 2629 TACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATAT 2688 Query 4007 TGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCT 4066 ||| || ||||| | |||| ||| || |||||||| ||||| |||||| ||||| | Sbjct 2689 TGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT 2748 Query 4067 TTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTAC 4126 ||||||| |||| | || | ||| ||||| |||| ||| | ||||||||| Sbjct 2749 TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTA 2808 Query 4127 TCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATG 4185 | || |||||| || | ||||| | |||||||| || || ||| || | | Sbjct 2809 TGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGG 2867 Query 4186 ATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATG 4245 | ||| || ||||||| | |||| || | || ||| ||| ||| Sbjct 2868 AACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATG 2915 Query 4246 ACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATA 4305 | ||| | ||||||||||| |||||| | |||||||||| ||||| | | || Sbjct 2916 ATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTA 2975 Query 4306 ATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 |||| | |||||||| || | || || ||| ||||| || ||||| || |||| Sbjct 2976 ATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 3032 Score = 370 bits (410), Expect = 4e-99 Identities = 318/393 (81%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 6584 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 6643 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 6644 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 6703 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 6704 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 6763 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 6764 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 6823 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 6824 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 6883 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 6884 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 6943 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949 | | ||||| |||||||| ||| | ||| ||| Sbjct 6944 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 6976 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 5310 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 5369 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 5370 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 5429 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 5430 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 5489 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 5490 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 5547 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 5548 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 5606 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 5607 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 5666 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 5667 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 5704 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 4016 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 4075 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 4076 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 4130 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 4131 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 4189 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 4190 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 4248 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 4249 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 4308 Query 5762 CGTCCAT 5768 |||| || Sbjct 4309 CGTCTAT 4315 Score = 132 bits (146), Expect = 2e-27 Identities = 224/320 (70%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 1370 CGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAG 1429 ||||| |||||| | | ||||||| ||||| || || ||||| || ||| Sbjct 2 CGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAAT 61 Query 1430 GATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACG 1487 ||||| || ||||||||||| ||| |||||||||| |||| || | |||| | | Sbjct 62 GATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATG 119 Query 1488 GCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCACGACC 1547 |||||||||||| || | ||||| | ||||||| |||||| || || |||| Sbjct 120 GCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACC 179 Query 1548 CTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGG 1606 ||||||| ||||| |||||| ||| |||||| |||| | | || | | |||| Sbjct 180 CTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGG 238 Query 1607 CCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACATGACGCTTATTCTCGTAAA 1666 || ||||| | || || || || |||||||| || ||||||| ||| ||| Sbjct 239 CCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCT 298 Query 1667 GGTTGGCTGTGGCCTGTTGA 1686 |||||| ||||||||||||| Sbjct 299 GGTTGGTTGTGGCCTGTTGA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385545478000