Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gregarina_20niphandrodes_20[genbank_20GCA_5F000223845.4_202014-04- 11] 469 sequences; 14,009,070 total letters Query= NC_005041.2 Length=5335 Score E Sequences producing significant alignments: (Bits) Value seq119 654 0.0 >seq119 Length=5926 Score = 654 bits (724), Expect = 0.0 Identities = 1008/1426 (71%), Gaps = 58/1426 (4%) Strand=Plus/Plus Query 978 ACTATGGGAGATGATGCCGGACGAGATAGCGTCTCATCCAGCGACATGGTGGAAGCTGTT 1037 ||| ||||||||| | ||||||||| ||| |||||| | |||||||||| | | Sbjct 1026 ACTCTGGGAGATGCTTCCGGACGAGTGGGCGAATCATCCGGGAGTATGGTGGAAGATTAT 1085 Query 1038 GGAGGAGAGCCCTCTGGAGGACCGGTTCAAGGACAAGCTGAAGTCACTTCTAGTTCGG-- 1095 ||| || || ||||| | | | |||| | || || || || ||| | || Sbjct 1086 GGATACGATACCACTGGACCAACAATGCAAGAAT--GC-GATGTTACAGCTAATAGGGCG 1142 Query 1096 -TGGACCAAAAATTACAAGAATTGGTTGATCGGTTCGTTTCCCGCCTTGAAGaaaaaaaT 1154 |||| ||| |||||||| | |||| || ||||||||| ||||||||||| || || || Sbjct 1143 TTGGAGCAAGAATTACAAACAATGGTCGACCGGTTCGTTACCCGCCTTGAAAAAGAAGAT 1202 Query 1155 TGGAAAGACAGTGGATACTATATTAGCGATGTATATGCCTGCGAATCATCTGAACGAGCT 1214 ||| ||||||| ||||||||| | ||||| | ||||||||||||| || ||||||| Sbjct 1203 TGGCAAGACAGCGGATACTATGTGTCAGATGTCTTTGCCTGCGAATCAATTGGACGAGCT 1262 Query 1215 AATGCACTGGCTAGACGACTGGAGCAAAGAGCTGAATCTTTCGGAAGAGGATTTATCGGA 1274 | | | |||||| ||| ||| || |||| | | |||| |||||||| ||||| Sbjct 1263 CAGGGATTGGCTAAGCGAATGGCTGAACGAGCGGGAAATTTCCGAAGAGGACTTATCCTC 1322 Query 1275 ATATTTATCCACAATAATCACG---------------TCCATACAATCCACGCATGCCCC 1319 |||| ||| |||| |||| | |||| || |||||| ||| || Sbjct 1323 ATATCTATTCACAGCGATCAAGATGGCGGTGCCCATATCCACACCATCCACAGCTGCGCC 1382 Query 1320 TACACAAGCAGGACGTGCAGGTGCCAGTTCAAGAACTTCCCTGAAGCGAAAGAAGACATT 1379 ||| ||| |||| ||||||||||| | ||||| ||||| |||||| |||| ||| | Sbjct 1383 TACGCAAACAGGGCGTGCAGGTGCTACTTCAAAGCGTTCCCCGAAGCGCAAGAGGACGCT 1442 Query 1380 AGACGATTGCTTCGAAAGCCTCCAGCCATCGAAACGTTCACACGACGAGACTGGGAAAAT 1439 |||||| | ||||||||||||||| ||||||||||||||| ||| | || ||||||||| Sbjct 1443 AGACGACTTCTTCGAAAGCCTCCACCCATCGAAACGTTCAAGCGAAGCGATTGGGAAAAT 1502 Query 1440 ATCACAAAGTATTTTTGTACGTCAGGGCGACGAGCAACGTTCTTTAAAATCTTTGGACAC 1499 ||||||||||||||||||||| |||| |||||||||||||| ||||||| || | Sbjct 1503 ATCACAAAGTATTTTTGTACGAAAGGGAGACGAGCAACGTTCGCTAAAATCAACGGTGCC 1562 Query 1500 CTACAAAGATTACCTCTTGAAATTACAGCTTTATCCGACTCTACAATATCAGGCCAAGAT 1559 |||||||| | ||||||||||||||| | |||||||| || |||||||||||| | Sbjct 1563 ATACAAAGACTTCCTCTTGAAATTACAAATCTATCCGACATTATCCTATCAGGCCAAGTT 1622 Query 1560 GGAGGAGGACCGGACTCAGGCGTGGAGAACTGCAATGATCCGCTTGAATTTCACAGTGGA 1619 | ||||||| | |||||||| ||||||||||| | || |||||||| | || || | Sbjct 1623 GAAGGAGGATCACACTCAGGCCTGGAGAACTGCCACGACCCGCTTGACAATAACGATGAA 1682 Query 1620 CCAGAAGTCGGGGATATTCCAGCG---CGTCCTAGAGCTAACCGACGCCGTAAAAGACGA 1676 | ||| || ||| ||| | || || | ||| || ||| | || |||||| || Sbjct 1683 C--GAAAACGAGGA-ATTGAACCGAAAGGTGATGGAGGTACTCGAAGTCGCAAAAGAAGA 1739 Query 1677 GATCAAATTG---TTGTTGGCGGAGACGGAGGAATCGGAGGAGCTACAGGAATAATTTTG 1733 | | ||| | || ||||| ||||||||| |||| | |||||| ||||| | Sbjct 1740 GGT---GTTGGCAACGCAGGAGGAGATGGAGGAATCAGAGGGGACACAGGAGTAATTCTT 1796 Query 1734 GACTT-GTTAAGTAAGTGTGCAGTCTGTCCTTTAACAGAGATAGTGTTTACTAAAGAATA 1792 || || ||||| | || ||| || ||||| ||| | |||||||| | |||| || || Sbjct 1797 GATTTAATTAAG-AGGTATGCTGTTTGTCCATTATCTGAGATAGTATATACTCGCGAGTA 1855 Query 1793 TTTGCAAGATCCCATAGTTGCTTGTAAAAGATTAGATTCAAAAGAGGTTAAGGATGCTAT 1852 ||| || ||||| |||| |||||| |||||| | || || ||| | ||||| Sbjct 1856 CTTGGAAAATCCC---CTTGCAGTTAAAAGGTTAGATGATAGGGATGTAAAGAACGCTAT 1912 Query 1853 AGATACTAGGGCTAGTGTAATCAATACTTGGGAAAGGGAAGATTTTGTTGCTTTTTATAA 1912 |||| ||| | | || ||||||||| | || || |||| |||| |||||| | Sbjct 1913 AGATTGCCATGCTGCTATTATTAATACTTGGAATAGAGAGGATTATGTTAAGTTTTATGA 1972 Query 1913 TAATCCAAATACTATATTAATTTGGAGTGCACGTTCTCTTAATGCATTTGATAGTTATTA 1972 | ||||| ||| | |||||||||||||||| | || | | | || ||||| Sbjct 1973 GGACCCAAACACTGTTAAAATTTGGAGTGCACGTAATATTGACTCGGTGGAGTTATATTA 2032 Query 1973 CTTTAATTATGAAGAGTCTTTTAATGTAGTAACTGAGTTACTTACCTTTCAA-ATGGGT- 2030 || | | || | || ||| || | | | | | | ||| | |||| ||||| Sbjct 2033 TTTAACTGATAATGAATCTAGAGATATTATTAATAAACTGCTTGATTATCAATGTGGGTT 2092 Query 2031 ------GAAA-ATCTTGT-TCAATTTTGTAGGAATCTTGTAGACACTTTGGAATGTAATA 2082 |||| | |||| | |||| | ||| | ||||| || |||| Sbjct 2093 AGCTAAGAAACAGTTTGTAACGGATTTG-ATTAATGTAACAGACA---TG------AATA 2142 Query 2083 TTCCAAAACGTAATTGCTTTGTAGTTTGTAGTCCACCTAGTGCTGGGAAAAACTTTTTCT 2142 |||| || ||||||||||| || || ||| || || |||||||| || |||||| | | Sbjct 2143 TTCCCAAGTGTAATTGCTTTCTAATTGTTAGCCCTCCAAGTGCTGGCAAGAACTTTCTAT 2202 Query 2143 TTGATGGTGTTAAGGATTATTATTTGAATTCAGGACAGATGAACAATCCTAATAAATATA 2202 |||| | |||| ||||| ||| | ||| ||||| ||| | || ||||||||||||| Sbjct 2203 GCGATGCTATTAAAGATTACTATATTAATGTTGGACAAATGCAGAACCCTAATAAATATA 2262 Query 2203 ATCAATTTGCATATCAGGATTGCCATAATAGAAGGATTATTATATGGAATGAACCTAATT 2262 || || || ||||||||||| || |||||| | || |||| ||||||||||| || | Sbjct 2263 ATACCTTCGCGTATCAGGATTGTCACAATAGACGACTTCTTATTTGGAATGAACCAAACT 2322 Query 2263 ATGAACCAAGGGAAATGGAGAACTTAAAAATGCTGTTTGCTGGTGATAATTTGTCTGCCA 2322 | ||||| ||||||| |||||| || || ||| | |||| || ||||| |||||||| | Sbjct 2323 ACGAACCTAGGGAAACGGAGAATTTGAAGATGTTATTTGGAGGGGATAACTTGTCTGCTA 2382 Query 2323 ATGTAAAATGTAAGCCTCAGGCAAATGTAAAACGAACACCTGTTAT 2368 |||| || ||||| ||||| || |||||||| || || || || || Sbjct 2383 ATGTTAAGTGTAAACCTCAAGCTAATGTAAAGCGTACTCCAGTAAT 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16959913000500