Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq2186 764 0.0 seq2438 704 0.0 >seq2186 Length=767 Score = 764 bits (846), Expect = 0.0 Identities = 426/428 (99%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 265 Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 325 Query 5608 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 5667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 326 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 385 Query 5668 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5727 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 386 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 445 Query 5728 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 505 Query 5788 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTAT 5847 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 506 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTAT 565 Query 5848 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 5907 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 625 Query 5908 ACGCGAAT 5915 |||||||| Sbjct 626 ACGCGAAT 633 >seq2438 Length=984 Score = 704 bits (780), Expect = 0.0 Identities = 416/428 (97%), Gaps = 5/428 (1%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 617 Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 677 Query 5608 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 5667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 678 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 737 Query 5668 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5727 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 738 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 797 Query 5728 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5787 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 798 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACG-TGGAGTCCACGTTCTTTAATAGTG 856 Query 5788 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTAT 5847 |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| Sbjct 857 GACTCTTGTTCCAAACTGGAAC-ACACTCAA-CCTATCTCGGTCTATTCTTTTGATTATA 914 Query 5848 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 5907 |||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||| Sbjct 915 AAGGGAWTTTGCCGATTTC-GSCTATTGGTT-AAAAATGAGCTGATTTAACAAAAATTTA 972 Query 5908 ACGCGAAT 5915 |||||||| Sbjct 973 ACGCGAAT 980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20385895652428