Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq2186 719 0.0 seq2438 637 2e-179 >seq2186 Length=767 Score = 719 bits (796), Expect = 0.0 Identities = 433/456 (95%), Gaps = 0/456 (0%) Strand=Plus/Plus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 265 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 325 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 326 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 385 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 386 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 445 Query 5729 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 505 Query 5789 GACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTAT 5848 |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct 506 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTAT 565 Query 5849 AAGGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATTTA 5908 |||| ||||| | |||| || || |||||||||||| ||||||||||||||| ||||| Sbjct 566 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 625 Query 5909 ACGCGAAATTTAACAAAACATTAACGTTTACAATTT 5944 ||||||| |||||||||| ||||||| ||||||||| Sbjct 626 ACGCGAATTTTAACAAAATATTAACGCTTACAATTT 661 >seq2438 Length=984 Score = 637 bits (706), Expect = 2e-179 Identities = 405/433 (94%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 617 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 677 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 678 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 737 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 738 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 797 Query 5729 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5788 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 798 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACG-TGGAGTCCACGTTCTTTAATAGTG 856 Query 5789 GACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTAT 5848 |||||||||||||||||||||| ||||||| | ||| ||||| |||||||||||||| Sbjct 857 GACTCTTGTTCCAAACTGGAAC-ACACTCA-ACCTATCTCGGTCTATTCTTTTGATTATA 914 Query 5849 AAGGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATTTA 5908 |||| |||| | |||| | || ||||| |||||| ||||||||||||||| ||||| Sbjct 915 AAGGGAWTTTGCCGATTTC-GSCTATTGGTT-AAAAATGAGCTGATTTAACAAAAATTTA 972 Query 5909 ACGCGAAATTTAA 5921 ||||| ||||||| Sbjct 973 ACGCG-AATTTAA 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20389095447696